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Report for Sequence Feature Glyma04g01340

Feature Type:gene_model
Chromosome:Gm04
Start:846867
stop:847751
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G17080AT Annotation by Michelle Graham. TAIR10: Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263 SoyBaseE_val: 5.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03087PFAM Arabidopsis protein of unknown function JGI ISS
UniRef100_B0BLH3UniRef Annotation by Michelle Graham. Most informative UniRef hit: CM0216.180.nc protein n=1 Tax=Lotus japonicus RepID=B0BLH3_LOTJA SoyBaseE_val: 1.00E-116ISS
UniRef100_I1JSM7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSM7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g011800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01340
>Glyma04g01340.1   sequence type=CDS   gene model=Glyma04g01340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTCTCCTTTGAACCCAAAATCTGGTTCCCACGGTCGCTCAAATAGCTTGCCCTCTAGACCACACCCTCTCATTCTCAAATGCAATGAACACTTGGAAAGCTTAAGGGCTTCCAAAGAAACCTCCTCTTCCTCAACACTTCTTAGACATAAGGTAGAAGGCTTGCAAGATCTGATTGAGTGTGTTGAAAAATTGACTCAGCTTCCCCCTTACTCAAGATGTCCTTCTCCACGAGTGTCAAGAGAATTGGGTAAAAGACATGGATCCTTAAGGCTCTTAGACGTGTGTACTGCGGCCAAAGATGCTTTACTACGCACAAAAGAATGCACACGTGAACTTCAATCAACCATAAGAAGGAAGAGAGGTGGTGAAGTGGAGCTGACAGCAGAAGTCAAGAAATTCTTGACATCTAGGAAGGTAGTGAAAAAGGCCATCTCCAAAGCCTTGGCAAATTTGAACAGCACTTCAAAGAGTTCCAACATCTCATCTAATACAAACAAAGATCACCGAACAGTGGCTTTGATTAGCTTATTACAAGACATGGAAGTGGCTACACTATCAACATTTCAGACACTGCTGCAATTTATCTCAGGGTCAACACAATCAAAGTCAAACAGCTGGCTTTCGATTTCCAAGCTAATTCAGCCCAAGAGAGTCGGTTGCTCGCTAGTGGCAGATGAAAGTGAATTTGCCCAAGTGGATGCAGCATTGCAGTCCTTTGTATTTACCAAGACTTGCAAATTTGAAGACATAAACAATCTGCAAAACCAGTTGGAGAAAATGGAGTCGTGCATTAAAGACTTTGAAGAAGGACTTGAGTTTCTATTTAGGTGTCTGATTAAAATCAGGGTTTCCCTTCTTGATATCCTTAACCACTAG
Predicted protein sequences of Glyma04g01340
>Glyma04g01340.1   sequence type=predicted peptide   gene model=Glyma04g01340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSPLNPKSGSHGRSNSLPSRPHPLILKCNEHLESLRASKETSSSSTLLRHKVEGLQDLIECVEKLTQLPPYSRCPSPRVSRELGKRHGSLRLLDVCTAAKDALLRTKECTRELQSTIRRKRGGEVELTAEVKKFLTSRKVVKKAISKALANLNSTSKSSNISSNTNKDHRTVALISLLQDMEVATLSTFQTLLQFISGSTQSKSNSWLSISKLIQPKRVGCSLVADESEFAQVDAALQSFVFTKTCKFEDINNLQNQLEKMESCIKDFEEGLEFLFRCLIKIRVSLLDILNH*






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