Glyma04g01300 - SoyBase

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Report for Sequence Feature Glyma04g01300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	836570
stop:	837625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17080	AT	Annotation by Michelle Graham. TAIR10: Arabidopsis protein of unknown function (DUF241) \| chr2:7433326-7434117 REVERSE LENGTH=263	SoyBase	E_val: 2.00E-56	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03087	PFAM	Arabidopsis protein of unknown function	JGI		ISS
UniRef100_B0BLH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0216.180.nc protein n=1 Tax=Lotus japonicus RepID=B0BLH3_LOTJA	SoyBase	E_val: 3.00E-132	ISS
UniRef100_I1JSM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01300

Paralog	Evidence	Comments
Glyma06g01340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g011400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01300

Limit To All Plant Sequences

>Glyma04g01300.1   sequence type=CDS   gene model=Glyma04g01300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTCTCCTTTGAACCCAAAATACAGTTCCCACGGTCGCTCAAATAGCTTGCCCTCTAGACCACACCCTCTCATTCTCAAATGCAATGAACACTTGGAAAGCTTAAGGGCTTCCAAAGCAACCTCCTCTTCCTCAACACTTCTTAGACATAAGGTAGAAGGCTTGCAAGATCTGATTGAGTGTGTTGGAAAATTGATTCAGCTTCCCCTCACTCAAGATGTCCTTCTCCACGAGCGTCAAGAGAATTGGGTAAATGAGCTTTTGGATGGATCCTTAAGGCTCTTAGACGTGTGTACTGCAGCCAAAGATGCTTTACTACACACAAAAGAATGCACACGTGAACTTCAATCAACCATAAGAAGGAAGAAAGGTGGTGAAGTGGAGCTGACAGCAGAAGTCAAGAAATTCTTGACATCTAGGAAGGTAGTGAAAAAGGCCATCTCCAAAGCCTTGGCAAATTTGAACAGCACTTCAAAGAGTTCCAACATCTCATCTAATACAAACAAAGATCACCGAACAGTGGCTTTGATTAGCTTATTACAAGACATGGAAGTGGCTACACTATCAACATTTCAGACACTGCTGCAATTTATCTCAGGGTCAACACAATCAAAGTCAAACAGCTGGCTTTCGATTTCCAAGCTAATTCAGCCCAAGAGAGTCGGTTGCTCGCTAGTGGCAGATGAAAGTGAATTTGCCCAAGTGGATGCAGCATTGCAGTCCTTTGTATTTACCAAGACTTGCAAATTTGAAGACATAAACAATCTGCAAAACCAGTTGGAGAAAATGGAGTCGTGCATTCAAGACTTTGAAGAAGGACTTGAGTTTCTATTTAGGCGTCTGATTAAAATCAGAGTTTCCCTTCTTAATGTCTTCAACCACTAG

Predicted protein sequences of Glyma04g01300

Limit To All Plant Sequences

>Glyma04g01300.1   sequence type=predicted peptide   gene model=Glyma04g01300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSPLNPKYSSHGRSNSLPSRPHPLILKCNEHLESLRASKATSSSSTLLRHKVEGLQDLIECVGKLIQLPLTQDVLLHERQENWVNELLDGSLRLLDVCTAAKDALLHTKECTRELQSTIRRKKGGEVELTAEVKKFLTSRKVVKKAISKALANLNSTSKSSNISSNTNKDHRTVALISLLQDMEVATLSTFQTLLQFISGSTQSKSNSWLSISKLIQPKRVGCSLVADESEFAQVDAALQSFVFTKTCKFEDINNLQNQLEKMESCIQDFEEGLEFLFRRLIKIRVSLLNVFNH*

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