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Report for Sequence Feature Glyma04g01270

Feature Type:gene_model
Chromosome:Gm04
Start:822065
stop:823931
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21580AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S25 family protein | chr2:9236629-9237510 FORWARD LENGTH=108 SoyBaseE_val: 1.00E-54ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1767 KOG 40S ribosomal protein S25 JGI ISS
PTHR12850Panther FAMILY NOT NAMED JGI ISS
PTHR12850:SF8Panther SUBFAMILY NOT NAMED JGI ISS
PF03297PFAM S25 ribosomal protein JGI ISS
UniRef100_B0BLI2UniRef Annotation by Michelle Graham. Most informative UniRef hit: CM0216.350.nc protein (Fragment) n=1 Tax=Lotus japonicus RepID=B0BLI2_LOTJA SoyBaseE_val: 2.00E-54ISS
UniRef100_C6SWX1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWX1_SOYBN SoyBaseE_val: 2.00E-71ISS

Expression Patterns of Glyma04g01270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01270
ParalogEvidenceComments
Glyma06g01310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g011100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01270
>Glyma04g01270.1   sequence type=CDS   gene model=Glyma04g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAAAGAAGGACAAGGCTCCCCCACCTTCATCCAAGCCTGCCAAGTCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGTAAGCAAAAGGAAAAGGTGAATAACATGGTGCTCTTCGATCAGGGTACCTATGACAAGCTCCTCTCTGAGGCACCCAAATACAAGCTCATTACTCCTTCCATTCTCTCTGACCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATTAGGGAATTGATGGCTAGAGGTTCAATCAGGATGGTGTCTGCCCATGCAAGTCAGCAGATTTACACTAGAGCTACAAACACCTAG
Predicted protein sequences of Glyma04g01270
>Glyma04g01270.1   sequence type=predicted peptide   gene model=Glyma04g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT*






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