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Report for Sequence Feature Glyma04g01260

Feature Type:gene_model
Chromosome:Gm04
Start:817079
stop:818437
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34560AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16507923-16508588 FORWARD LENGTH=221 SoyBaseE_val: 5.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B0BLI4UniRef Annotation by Michelle Graham. Most informative UniRef hit: CM0216.380.nc protein n=1 Tax=Lotus japonicus RepID=B0BLI4_LOTJA SoyBaseE_val: 7.00E-21ISS
UniRef100_I1JSM1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSM1_SOYBN SoyBaseE_val: 9.00E-158ISS

Expression Patterns of Glyma04g01260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01260
ParalogEvidenceComments
Glyma06g01300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g011000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01260
>Glyma04g01260.1   sequence type=CDS   gene model=Glyma04g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTGCTCCATCAACTTCCACAAGCTCCAAACAAAGAAAACCACGAAACCTCGGAAACATCATCCACAGCTCCGAAAGATCGCAAACATGTTGCGTTACGCGGAGTTGTGCGTTGTTCTGGTCTTGGTTTCGAGGCTCTCCATCAACCTACCCTACACAACCGAGTGTTTCCGCAACTTCATGGGTAGCCCTCGCTTCGTTTTTCTCCTGGGAAACGTCATCATCATAACGCTCTTCGCACAATCTGGCCACTTTTCATCTTCAGCCAAACGTGCCCCAGAACCTGCAGATCTCTATCTCGAGTTCCTCCAAAACACCACCATCCATCAGAAACTTCAAGTCCACGTCAGCAAACCAAAGCCAAGTGCGAGAGTATTGGAGAGTGTTATAATAAAGGGCACCAAAACTGCAGAGACTGGTTTGGAGGTGAAGAAGGATTATAGAAGGTCTAAATCGGATATTGTTGTGAAGCGCGTGGAGAGTGAGAAGGTGCCTCCACGCGTGTTGCAGAGGTGTGAGACTGAGAAAGTTCTTGTTAATAATAACTCGTACCCTGAAGATGGCATGAGCAACGACGACTTTCGTCGCAAGGTTGAGGCTTTCATTGCTCGCCAACAGAGGCTACGAACTACAGAACTCTGTAATTAA
Predicted protein sequences of Glyma04g01260
>Glyma04g01260.1   sequence type=predicted peptide   gene model=Glyma04g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCSINFHKLQTKKTTKPRKHHPQLRKIANMLRYAELCVVLVLVSRLSINLPYTTECFRNFMGSPRFVFLLGNVIIITLFAQSGHFSSSAKRAPEPADLYLEFLQNTTIHQKLQVHVSKPKPSARVLESVIIKGTKTAETGLEVKKDYRRSKSDIVVKRVESEKVPPRVLQRCETEKVLVNNNSYPEDGMSNDDFRRKVEAFIARQQRLRTTELCN*






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