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Report for Sequence Feature Glyma04g01244

Feature Type:gene_model
Chromosome:Gm04
Start:804843
stop:810830
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01244
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16370AT Annotation by Michelle Graham. TAIR10: thymidylate synthase 1 | chr2:7082038-7084333 REVERSE LENGTH=519 SoyBaseE_val: 0ISS
GO:0006231GO-bp Annotation by Michelle Graham. GO Biological Process: dTMP biosynthetic process SoyBaseN/AISS
GO:0006545GO-bp Annotation by Michelle Graham. GO Biological Process: glycine biosynthetic process SoyBaseN/AISS
GO:0006730GO-bp Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009257GO-bp Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004146GO-mf Annotation by Michelle Graham. GO Molecular Function: dihydrofolate reductase activity SoyBaseN/AISS
GO:0004799GO-mf Annotation by Michelle Graham. GO Molecular Function: thymidylate synthase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG0673 KOG Thymidylate synthase JGI ISS
PTHR11549Panther DIHYDROFOLATE REDUCTASE JGI ISS
PTHR11549:SF2Panther THYMIDYLATE SYNTHASE JGI ISS
PF00186PFAM Dihydrofolate reductase JGI ISS
PF00303PFAM Thymidylate synthase JGI ISS
UniRef100_I1K753UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Glycine max RepID=I1K753_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002339F06UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339F06 related cluster n=1 Tax=unknown RepID=UPI0002339F06 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01244
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01244 not represented in the dataset
Glyma04g01244 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01244
ParalogEvidenceComments
Glyma06g01280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01244 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g010800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01244
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g01244
>Glyma04g01244.2   sequence type=transcript   gene model=Glyma04g01244   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCAATCCAATTAATTAGGGTCGGATCCACCCTTTTTAAACAATTTGATTCGCTCCATAAACTACTAAACCCTAAAGAACCCTTGCTTCCCTGGCCTTCAATTTCGCGTTCATGCTGATTCATGACCCGACTCTAGACCCGATATAACCCAATCGGATCGGACACTCACCCGACCCGTTTTCTTCCCGTCTCTTTATAACAACAACAACGCCTTATCCCACTAGGTGGGGTCGGCTTTTTTTTTTCCCGTTTCTCTGCGAAAAAAAAATCCATAGCGGTTTTTCTCACTCTCAGCAGCTACTTTATTCCTCACTTTTTTCTTTCATTTTCTTATGACCTCTTCTCCTTCTTATTATAATTATAATATAAATATAAACATTCTTTCTGTTTGTACTTTGATAATGATCCTGAGTTGAAAAAGTTCGTGGAACTTTGCACCTTGTTAGGTCATATTCCTTTCAAAATTACGCGCTTCGGCTTGACATCGATTCCTTTGCACTTCCAAAAGAATTGGTTGTGCAGTCCTTGTTTTCAGACACCATCTTTAAGTTTCTGTCGACGTTTGAGTTCTATAATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAAAATCTGGGGATTCTCACTCCTTCGGGCTGTTTCTGCTTTTTGAAATGAGAACCATGGTGAGCATGGATGCTGATGTGCTGTGCAAGATAGCTCATAATTTATTATCAACACCTTAGGGGCTGTATGGCAAGCTAAATGACAGGCACAACCTTAGGAAGATTATGTTAAATCTGTGTACAATTAAAAGAACATATCGTAGGACTTAATTCATCGCATTCATACTGTTAGTGGGAATTCTTTGGCTCCACCTGATATGCCTCTAAGGTGATTTAGATTGACTTTTGAGGGTTCTGAAACTCGATGTTCAAGATAAGCGGTCTTTTTAAGTGGGCCATTTCTATTTTGTTTATTTGATATTTTGGACATGCAGCTTAAGTTCCTATTAATAAGTTTTTATAATACTAGTTTATGTCGTAAATTTAACTAAAAAAATTATTGAAATATTTAAAATAAAACATTTT
Coding sequences of Glyma04g01244
>Glyma04g01244.1   sequence type=CDS   gene model=Glyma04g01244   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA

>Glyma04g01244.2   sequence type=CDS   gene model=Glyma04g01244   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA
Predicted protein sequences of Glyma04g01244
>Glyma04g01244.1   sequence type=predicted peptide   gene model=Glyma04g01244   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV*

>Glyma04g01244.2   sequence type=predicted peptide   gene model=Glyma04g01244   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV*






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