Glyma04g01230 - SoyBase

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Report for Sequence Feature Glyma04g01230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	798848
stop:	802422
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21540	AT	Annotation by Michelle Graham. TAIR10: SEC14-like 3 \| chr2:9220831-9223737 REVERSE LENGTH=548	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008526	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF5	Panther	SEC14 CYTOSOLIC FACTOR-RELATED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_B0BLI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0216.420.nc protein n=1 Tax=Lotus japonicus RepID=B0BLI8_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A69A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A69A related cluster n=1 Tax=unknown RepID=UPI000233A69A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01230

Paralog	Evidence	Comments
Glyma06g01270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g010600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01230

Limit To All Plant Sequences

>Glyma04g01230.2   sequence type=CDS   gene model=Glyma04g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGACATCATGTCCGCACCTGTTGACCTACCCATGAAACTTGGTCATGAAATTGAATATTCCGAGGATGAAAGGAAGAAAAAGCTTGGATCGTTCAAGAAGGTGGCAATCAGCGCCTCATCTAAGTTCAAGCATTCCTTTGCCAAAAGGGGGAGGAGGCACAGCAGGGTTATGTCTGTTTCTATTGAGGATGATCTTGATGCAGAAGAGTTGCAAGCAGTTGATGCTTTTCGCCAAGCACTCATCTTGGAAGAGCTATTGCCCGCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTTAAGTGGAGGCAAGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGGCCTGTTTACATTGAAAAGTTGGGTCAGGTGGACTCTATTAAGCTGATGCAAGTAACAACAATGGAACGCTATCTCAAGTACCATGTAAGAGAGTTTGAGAGGACCTTCGCTGTTAAGTTGCCTGCGTGTTCCATCTCAGCAAAGAAGCACATTGACCAAAGTACAACTCTTTTGGATGTGCAAGGAGTGGGTCTTAAAAGTTTGAACAAAGCTGCAAGGGATCTCCTCCAGAGGCTTCAGAAAATTGACGGTGACAACTACCCTGAGTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATGTCCTAGGTAATAAATACCAGAGGAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGTCCATGGAATGACCCAGATATCTTGAAGATGGTTCACAATGGCGAGGGCAAATGCAAGAGAAAAACCTTATCTGGGATTGAGGAGAAAACAATCATAGAAGATGGTACAGCACATCAAAATGTAGGAAACAAAGAATCATTTCCAGAGACATACGATGTTGATGAACAATGTTTATCTCCAAAAAAGCAATGTGCTGTGTATAAATATGACGCATTTGTCCCTGTGCTGGGCAAGCCAGTCGATTCATCTTGGAATAAATTAACACAGAAAGATAAAGATGCTCTTTCTAAAGATTGTTTTCCTAGCAAGACTTGTGATGGGTATAGCAATCACTTTGTTGGAGGAATCATGGCCATTGTTATGGGAATTGTAACAGTGATCCGCTTGACAAGGAACATGCCAAGGAAAATCACTGAAGCAATAGTGTATGGCAGCAGCTCAGGGTATTATGATGGCACTATGATGAAAGCACCCACCATTTCATGCAATGATTACATGGCAGTGATGAAGCGCATGGCTGAACTTGAAGAGAAAGTCACTGTCCTCAGCATGAGACCTGTCATTCCACACGAAAAAGAGGAAGTGCTGAATAATGCTCTGTGCAGAGTCACCACTCTCGAACAAGACTTGGTTGCAACCAAAAAGGCACTTGATGATGCACTTGCTCGACAAGTAGAACTCCAAGCTCAAATTGACAAGAAGAAGAACAGCAACAAGAAGTTGGTATGTCATACCATTACCAGCCATACATTTCTATAA

Predicted protein sequences of Glyma04g01230

Limit To All Plant Sequences

>Glyma04g01230.2   sequence type=predicted peptide   gene model=Glyma04g01230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDIMSAPVDLPMKLGHEIEYSEDERKKKLGSFKKVAISASSKFKHSFAKRGRRHSRVMSVSIEDDLDAEELQAVDAFRQALILEELLPAKHDDHHMMLRFLRARKFDIEKTKQMWADMLKWRQEFGADTIMEDFEFNELEEVLKYYPQGHHGIDKDGRPVYIEKLGQVDSIKLMQVTTMERYLKYHVREFERTFAVKLPACSISAKKHIDQSTTLLDVQGVGLKSLNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNSIKSFLDPKTTSKIHVLGNKYQRKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPDILKMVHNGEGKCKRKTLSGIEEKTIIEDGTAHQNVGNKESFPETYDVDEQCLSPKKQCAVYKYDAFVPVLGKPVDSSWNKLTQKDKDALSKDCFPSKTCDGYSNHFVGGIMAIVMGIVTVIRLTRNMPRKITEAIVYGSSSGYYDGTMMKAPTISCNDYMAVMKRMAELEEKVTVLSMRPVIPHEKEEVLNNALCRVTTLEQDLVATKKALDDALARQVELQAQIDKKKNSNKKLVCHTITSHTFL*

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