Report for Sequence Feature Glyma04g01220
Feature Type: gene_model
Chromosome: Gm04
Start: 792426
stop: 797937
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g01220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G21520 AT
Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr2:9215956-9218953 FORWARD LENGTH=633
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG1471
KOG
Phosphatidylinositol transfer protein SEC14 and related proteins
JGI ISS
PTHR23324 Panther
SEC14 RELATED PROTEIN
JGI ISS
PTHR23324:SF5 Panther
SEC14 CYTOSOLIC FACTOR-RELATED
JGI ISS
PF00650 PFAM
CRAL/TRIO domain
JGI ISS
PF03765 PFAM
CRAL/TRIO, N-terminus
JGI ISS
UniRef100_I1JSL8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSL8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q94FN1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol transfer-like protein III n=1 Tax=Lotus japonicus RepID=Q94FN1_LOTJA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g01220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g01220
Paralog Evidence Comments
Glyma06g01260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g01220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g010500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g01220
Coding sequences of Glyma04g01220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g01220.1 sequence type=CDS gene model=Glyma04g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTGCTTTGAGGGGTTTTCGGGCAGTGACGAGAAGAAGGAGAGGAGATCTGACTTCGAGAACTCCGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAAAAGAAGGCACTTAATGCATCCTCCAAATTCAAACACACTCTTAGAAAGAAGAGTAGCAGGAGGAAAAGCGATGGCCGTGTTAGCTCCGTTTCAATTGAGGACGTTCGCGATTTCGAGGAGCTCCAGGCTGTCGACGCCTTTCGCCAATCCTTGATCATGGACGAATTGCTCCCCGAAGCCTTTGATGATTACCATATGATGTTAAGATTTTTGAAAGCGAGGAAGTTTGATATTGAAAAGGCAAAGCATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCCATCATGGCGTCGACAAGGAGGGAAGGCCTGTTTATATTGAAAGACTTGGAAAGGTCGATCCTAACAAACTTATGCAAGTTACAACTTTGGATAGATATGTGAAGTACCATGTGCAGGAGTTTGAGAAAGCTTTTGCAATCAAGTTTCCTGCTTGCTCTATTGCTGCCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAGACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTGTGGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTCATGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAGATGGTTCTCACTGGTGGAGCATGGCGGTCAAAACAAGTTGTAAAAGTTCTTAACAATGAAAGAAAGGTTATTGTGTATGCCAAGCCAGGATACCCGATGGTAAAAGGCAGTGATACATCCACTGCTGAATCAGGGTCAGAAGCCGAAGATATATCCTCTCCAAAAGCGATGAAGAGTTATTCACACCTTACGTTGACCCCTGTTCATGAGGAAGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATGAATATGTTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGATGTGGGTAGCACTGTCTATCTTCTTCTTGACTGTATTAACTCTCTTACGCCAAGTTGCATACCCTGTGACCAAGAAATTTCCAGCATTATCTTCCAATGATGATAAGAGTACTTCAAAACCACCTCCTGATACAACAAACATGGAAGTTCTTCCTCCTTCATCAACTCCATCATGTACAGAGGAAAATCTCCTTCCCTCCATGCTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGAGGAATTGTTGAATGCTGCTGTATGCCGGGTGGATGCTTTGGAAGCTGAGTTAATTGCTACTAAAAAGGCTCTATATGATGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGAAAAAGAAGTTTTGCTGGTGA
Predicted protein sequences of Glyma04g01220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g01220.1 sequence type=predicted peptide gene model=Glyma04g01220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLRKKSSRRKSDGRVSSVSIEDVRDFEELQAVDAFRQSLIMDELLPEAFDDYHMMLRFLKARKFDIEKAKHMWTDMLQWRKEFGADTIVQDFEFKELDEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTLDRYVKYHVQEFEKAFAIKFPACSIAAKRHIDSSTTILDVHGVGLKNFTKSARELITRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCEDQGGCLRSDKGPWKNPDIFKMVLTGGAWRSKQVVKVLNNERKVIVYAKPGYPMVKGSDTSTAESGSEAEDISSPKAMKSYSHLTLTPVHEEAKIVGKTSYASNLSGYDEYVPMVDIPVDAGWKKQASLQRSYTSKGAPPPDTQKTPEGIQARMWVALSIFFLTVLTLLRQVAYPVTKKFPALSSNDDKSTSKPPPDTTNMEVLPPSSTPSCTEENLLPSMLKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYDALMRQEELLAYIDRQEEAKLRKKKFCW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
