Glyma04g01170 - SoyBase

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Report for Sequence Feature Glyma04g01170

Feature Type:	gene_model
Chromosome:	Gm04
Start:	734341
stop:	737974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39120	AT	Annotation by Michelle Graham. TAIR10: myo-inositol monophosphatase like 2 \| chr4:18225578-18227988 REVERSE LENGTH=375	SoyBase	E_val: 2.00E-154	ISS
GO:0000105	GO-bp	Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process	SoyBase	N/A	ISS
GO:0006790	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004401	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidinol-phosphatase activity	SoyBase	N/A	ISS
GO:0008441	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity	SoyBase	N/A	ISS
GO:0008934	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol monophosphate 1-phosphatase activity	SoyBase	N/A	ISS
GO:0010347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-galactose-1-phosphate phosphatase activity	SoyBase	N/A	ISS
KOG2951	KOG	Inositol monophosphatase	JGI		ISS
PTHR20854	Panther	INOSITOL MONOPHOSPHATASE	JGI		ISS
PTHR20854:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00459	PFAM	Inositol monophosphatase family	JGI		ISS
UniRef100_G7J7Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol-1-monophosphatase n=1 Tax=Medicago truncatula RepID=G7J7Q5_MEDTR	SoyBase	E_val: 1.00E-173	ISS
UniRef100_I1JSL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01170

Paralog	Evidence	Comments
Glyma06g01210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g009800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01170

Limit To All Plant Sequences

>Glyma04g01170.2   sequence type=transcript   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGCGTCGTTCTGATTATTAAAATGGCAAGAGCAGAGAAAGTGAGAAACAGCGAAAAGGGCACGAATGGAAAAGTGGAAAACTCCTCATTTGTTTTTTGTGTGTTTAGTATCAGCTGCCATTGAAGCCACGAAGCAAAGAGATTGAGAGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGTAATTTTCTTTCATTGTTATATTATTGTTGACTCAAGAGTTCCCAAATTTCACTTTGACTCCGCTTGTTTTGTATCCAATTCAGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAATCTTCAGTGCAAATAATCTTCTCTGCAAATGGTCTTGATTCAGATGTTCCTAAGGACATGTATTACCGTACCATTTTCTGGCATTTAAGTTGAAAACCATGTACTCAGAATCTTGAATAAGTTCCTGCAGAAATTAACCTCTTTCTCTATTGGTTGGTCACGAACTCTTCAACACCTTGTAACAAGTTCCAAATTCAAAATAAACTCTATAAATAAATTTGAAAACTCTAACCAGAAGTTTTTCAAAATTTAAGGAAGTCACGTCTTCCACTCA

>Glyma04g01170.3   sequence type=transcript   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGCGTCGTTCTGATTATTAAAATGGCAAGAGCAGAGAAAGTGAGAAACAGCGAAAAGGGCACGAATGGAAAAGTGGAAAACTCCTCATTTGTTTTTTGTGTGTTTAGTATCAGCTGCCATTGAAGCCACGAAGCAAAGAGATTGAGAGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAATCTTCAGTGCAAATAATCTTCTCTGCAAATGGTCTTGATTCAGATGTTCCTAAGGACATGTATTACCGTACCATTTTCTGGCATTTAAGTTGAAAACCATGTACTCAGAATCTTGAATAAGTTCCTGCAGAAATTAACCTCTTTCTCTATTGGTTGGTCACGAACTCTTCAACACCTTGTAACAAGTTCCAAATTCAAAATAAACTCTATAAATAAATTTGAAAACTCTAACCAGAAGTTTTTCAAAATTTAAGGAAGTCACGTCTTCCACTCA

Coding sequences of Glyma04g01170

Limit To All Plant Sequences

>Glyma04g01170.1   sequence type=CDS   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAACTTTGTCTTATTTGCATGTGGCAGGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

>Glyma04g01170.2   sequence type=CDS   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTAAGAGCTTTATTACTGGTAATTTTCTTTCATTGTTATATTATTGTTGACTCAAGAGTTCCCAAATTTCACTTTGACTCCGCTTGTTTTGTATCCAATTCAGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

>Glyma04g01170.3   sequence type=CDS   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

Predicted protein sequences of Glyma04g01170

Limit To All Plant Sequences

>Glyma04g01170.1   sequence type=predicted peptide   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSQCHFLSHSPIPNTTFRLRAMAPHSTPLELNRFAEVGNKVADAAGEVIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDNFPSHAIYGEENGWRCEEKNADYVWVLDPIDGTKSFITGKPVFGTLVALLQNGTPILGIIDQPVLRERWIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATTLSYLHVAGFNVVAAGDKQIHQQALDSLQWK*

>Glyma04g01170.2   sequence type=predicted peptide   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLRALLLVIFFHCYIIVDSRVPKFHFDSACFVSNSGKPVFGTLVALLQNGTPILGIIDQPVLRERWIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATSFNVVAAGDKQIHQQALDSLQWK*

>Glyma04g01170.3   sequence type=predicted peptide   gene model=Glyma04g01170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSQCHFLSHSPIPNTTFRLRAMAPHSTPLELNRFAEVGNKVADAAGEVIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDNFPSHAIYGEENGWRCEEKNADYVWVLDPIDGTKSFITGKPVFGTLVALLQNGTPILGIIDQPVLRERWIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATSFNVVAAGDKQIHQQALDSLQWK*

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