Glyma04g01125 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01125

Feature Type:	gene_model
Chromosome:	Gm04
Start:	702717
stop:	704012
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01125

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21400	AT	Annotation by Michelle Graham. TAIR10: SHI-related sequence3 \| chr2:9158390-9159541 FORWARD LENGTH=174	SoyBase	E_val: 7.00E-42	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF05142	PFAM	Domain of unknown function (DUF702)	JGI		ISS
UniRef100_I1JSK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JSK8_SOYBN	SoyBase	E_val: 4.00E-156	ISS
UniRef100_Q70I38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0216.460.nc protein n=1 Tax=Lotus japonicus RepID=Q70I38_LOTJA	SoyBase	E_val: 9.00E-55	ISS

Expression Patterns of Glyma04g01125

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01125 not represented in the dataset	Glyma04g01125 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01125

Paralog	Evidence	Comments
Glyma06g01160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01125 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g009300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01125

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01125

Limit To All Plant Sequences

>Glyma04g01125.2   sequence type=transcript   gene model=Glyma04g01125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGTATGCCATATTAATATCACATACCCATCAAGATCCTAATTAATTGGTTTCTTTAATAATATCTTGCTCATGAAGAACATGCATGACAGGGCAAGAGGCATTTATGGATGGATATGAGGAAAGTACTAATTAAGAATAGAATGGAATATCGGCGTTGATGGATATGAAATACTTACTTTAGCTAGCTATCTAGCCACCTTAATTTGTGGAGCATTTTATATTTTAATGCTCAAGAAATAAACACGCAATGTGTCATGCCCTAGAAACAAATTTATTAATTAAACAAATGCGATCGAGAGTGATTGTTCTTTACTTGTTGAAATACCGATGACTAGATTTGTTCCCTTAATCAATTTGTTCAAAC

Coding sequences of Glyma04g01125

Limit To All Plant Sequences

>Glyma04g01125.1   sequence type=CDS   gene model=Glyma04g01125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGGCAAGAGGCATTTATGGATGGATATGAGGAAAGTACTAATTAA

>Glyma04g01125.2   sequence type=CDS   gene model=Glyma04g01125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGTATGCCATATTAA

Predicted protein sequences of Glyma04g01125

Limit To All Plant Sequences

>Glyma04g01125.1   sequence type=predicted peptide   gene model=Glyma04g01125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRATQQGISSSRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRHIPQNHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQSYNNNCKGESSTSLVDQQQNNLGFVNINNGSIQSRDSSGASASATMASVGPEETLLTPSPYPFSLASFRSGQEAFMDGYEESTN*

>Glyma04g01125.2   sequence type=predicted peptide   gene model=Glyma04g01125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRATQQGISSSRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRHIPQNHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQSYNNNCKGESSTSLVDQQQNNLGFVNINNGSIQSRDSSGASASATMASVGPEETLLTPSPYPFSLASFRSGMPY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain