Glyma04g01100 - SoyBase

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Report for Sequence Feature Glyma04g01100

Feature Type:	gene_model
Chromosome:	Gm04
Start:	661381
stop:	667263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34660	AT	Annotation by Michelle Graham. TAIR10: SH3 domain-containing protein \| chr4:16545595-16548294 REVERSE LENGTH=368	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG1118	KOG	Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation	JGI		ISS
PTHR22820	Panther	SH2 DOMAIN ADAPTOR PROTEIN	JGI		ISS
PTHR22820:SF9	Panther	UNCHARACTERIZED	JGI		ISS
PF00018	PFAM	SH3 domain	JGI		ISS
UniRef100_G7J7R7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutrophil cytosol factor n=2 Tax=Medicago truncatula RepID=G7J7R7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JSK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSK2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01100

Paralog	Evidence	Comments
Glyma06g01120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g009000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01100

Limit To All Plant Sequences

>Glyma04g01100.2   sequence type=transcript   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAAGGAACAAAGGCCCTTCTATAGAGTGTAATAATTTTTGAAAAACCTCTGTCTCTGTTGTTTCTGATGCAAATCTCCGTTGTCGTTGGTGTTTCGGTCTGAAATCAAATCAAAATCAACACTGTGCGCTGCGGTTAGAAGAGATTCAATCTGAATCTGAATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCAGCAAT

>Glyma04g01100.3   sequence type=transcript   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTTCTGGTATATGTATTTCCATTTCCACGAGTTTGATCTTAGTTTAATCTTAATACCAGCTCTTTTCGGTATTGTTATTGAATTACCATGTTATTTAACAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCAGCAAT

Coding sequences of Glyma04g01100

Limit To All Plant Sequences

>Glyma04g01100.1   sequence type=CDS   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTTCTTTTGTTATTTTTTATGATAAGATTCAATTCATTTTTTGCTCCTTGTTTTATTTCCTGTTCTCTAATGTTCCTCAGTTTTGCTTGCTTCCTTTCTATTCAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma04g01100.2   sequence type=CDS   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma04g01100.3   sequence type=CDS   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTCCATTTCCACGAGTTTGATCTTAGTTTAATCTTAATACCAGCTCTTTTCGGTATTGTTATTGAATTACCATGTTATTTAACAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

Predicted protein sequences of Glyma04g01100

Limit To All Plant Sequences

>Glyma04g01100.1   sequence type=predicted peptide   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLLLFFMIRFNSFFAPCFISCSLMFLSFACFLSIQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma04g01100.2   sequence type=predicted peptide   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma04g01100.3   sequence type=predicted peptide   gene model=Glyma04g01100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYFHFHEFDLSLILIPALFGIVIELPCYLTGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

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