Glyma04g01090 - SoyBase

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Report for Sequence Feature Glyma04g01090

Feature Type:	gene_model
Chromosome:	Gm04
Start:	648001
stop:	649711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36240	AT	Annotation by Michelle Graham. TAIR10: GATA transcription factor 7 \| chr4:17147376-17148211 REVERSE LENGTH=238	SoyBase	E_val: 7.00E-53	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10071	Panther	TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)	JGI		ISS
PTHR10071:SF113	Panther	ZINC FINGER (GATA TYPE) FAMILY PROTEIN	JGI		ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
UniRef100_D3YBF2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger (GATA type) family protein n=1 Tax=Trifolium repens RepID=D3YBF2_TRIRP	SoyBase	E_val: 7.00E-110	ISS
UniRef100_I1JSK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JSK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01090

Paralog	Evidence	Comments
Glyma06g01110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g008900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01090

Limit To All Plant Sequences

>Glyma04g01090.3   sequence type=transcript   gene model=Glyma04g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTAAATAGCACCAATTTCGCCCACGAAACCCTCTCTCTTGTCTCGTCGCTTCAAACTCCTCTGCGGTTTCCCCTTCTTGTTCTTCTTCACAGTGGGTTGAATTTGTGCGTAGAAATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAATGCTCTGCGAGGATATTTTCAGCCTGAACGCCAACACCGTCGCCGCCGGCGAAGATTTCTCCGTCGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACAACGAACAACAACAAGAATACGACGAAGGGAAACAAAGTTTATCGGCTTCAGAGGACCGCGGAGAAGACGATTGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAATGGGTTTCACACTTTGTGGACGATTCACTCCCGGAGCTGTCACTTCTATACCCGGTTCGTTCGGAGGAAGCAAACCGGTTTGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTTGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAGCCCAGCAACAGTCGCATGTGGTCGTTGGGTAGCCCGTTGCTCTCGCTGCCGTCTTCGCCGTCTTCGCCGTCGTCGTGTTCTTCTTCGGTGAGGGAGCCGCCGGCTAAGAAGCAGAAGAAGCAAGCCCAGGCCCAGCCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCGAAGACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTCAACCGGATACCGGCTTGGCCCAGGCCCAGACTCAAATGGTTCCCACCTGCTGATATCTTACTTAGATTAGGGAAAATTTGCAGTTTAGGTTTAGGGTATACAAACCCGGTTTGAACCGGTTCGGTTTTTGTATGATATTTAGTGGGTTTTTTAGTTTTAGTTAGTGCTAGGCAGTAGTCACCAGTCAGGTAACCAACCATAATATTAGGAATTAGTAGTAATTAGGCATTGATTGTTTGTAAGGTTGTATCGTATCCCATTTTCCTAGCGTTGTTGATTTTATTTAATGTAATACAAATAGTTTAAGTTAACTGGAGGAAGAGCGGTTTAATTATGAAGATTATT

Coding sequences of Glyma04g01090

Limit To All Plant Sequences

>Glyma04g01090.2   sequence type=CDS   gene model=Glyma04g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAATGCTCTGCGAGGATATTTTCAGCCTGAACGCCAACACCGTCGCCGCCGGCGAAGATTTCTCCGTCGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACAACGAACAACAACAAGAATACGACGAAGGGAAACAAAGTTTATCGGCTTCAGAGGACCGCGGAGAAGACGATTGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAATGGGTTTCACACTTTGTGGACGATTCACTCCCGGAGCTGTCACTTCTATACCCGGTTCGTTCGGAGGAAGCAAACCGGTTTGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTTGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAGCCCAGCAACAGTCGCATGTGGTCGTTGGGTAGCCCGTTGCTCTCGCTGCCGTCTTCGCCGTCTTCGCCGTCGTCGTGTTCTTCTTCGGTGAGGGAGCCGCCGGCTAAGAAGCAGAAGAAGCAAGCCCAGGCCCAGCCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCGAAGACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTCAACCGGATACCGGCTTGGCCCAGGCCCAGACTCAAATGGTTCCCACCTGCTGA

>Glyma04g01090.3   sequence type=CDS   gene model=Glyma04g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAATGCTCTGCGAGGATATTTTCAGCCTGAACGCCAACACCGTCGCCGCCGGCGAAGATTTCTCCGTCGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACAACGAACAACAACAAGAATACGACGAAGGGAAACAAAGTTTATCGGCTTCAGAGGACCGCGGAGAAGACGATTGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAATGGGTTTCACACTTTGTGGACGATTCACTCCCGGAGCTGTCACTTCTATACCCGGTTCGTTCGGAGGAAGCAAACCGGTTTGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTTGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAGCCCAGCAACAGTCGCATGTGGTCGTTGGGTAGCCCGTTGCTCTCGCTGCCGTCTTCGCCGTCTTCGCCGTCGTCGTGTTCTTCTTCGGTGAGGGAGCCGCCGGCTAAGAAGCAGAAGAAGCAAGCCCAGGCCCAGCCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCGAAGACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTCAACCGGATACCGGCTTGGCCCAGGCCCAGACTCAAATGGTTCCCACCTGCTGA

Predicted protein sequences of Glyma04g01090

Limit To All Plant Sequences

>Glyma04g01090.2   sequence type=predicted peptide   gene model=Glyma04g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVAVAKALKPSLRREFIVQQMLCEDIFSLNANTVAAGEDFSVDDLFDFSNGSLHNEQQQEYDEGKQSLSASEDRGEDDCNSNSTGVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRFVEPEPSAKKTPCFPWEMKITTKARTVRNRKPSNSRMWSLGSPLLSLPSSPSSPSSCSSSVREPPAKKQKKQAQAQPVGAQIQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKEVAQPDTGLAQAQTQMVPTC*

>Glyma04g01090.3   sequence type=predicted peptide   gene model=Glyma04g01090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVAVAKALKPSLRREFIVQQMLCEDIFSLNANTVAAGEDFSVDDLFDFSNGSLHNEQQQEYDEGKQSLSASEDRGEDDCNSNSTGVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRFVEPEPSAKKTPCFPWEMKITTKARTVRNRKPSNSRMWSLGSPLLSLPSSPSSPSSCSSSVREPPAKKQKKQAQAQPVGAQIQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKEVAQPDTGLAQAQTQMVPTC*

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