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Report for Sequence Feature Glyma04g01042

Feature Type:gene_model
Chromosome:Gm04
Start:611503
stop:613705
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01042
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16485AT Annotation by Michelle Graham. TAIR10: nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773 SoyBaseE_val: 3.00E-48ISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0042393GO-mf Annotation by Michelle Graham. GO Molecular Function: histone binding SoyBaseN/AISS
PTHR14445Panther GRB10 INTERACTING GYF PROTEIN JGI ISS
PTHR14445:SF27Panther JGI ISS
PF02213PFAM GYF domain JGI ISS
UniRef100_G7J7T1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=Medicago truncatula RepID=G7J7T1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023395E5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023395E5 related cluster n=1 Tax=unknown RepID=UPI00023395E5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01042
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01042 not represented in the dataset
Glyma04g01042 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01042
ParalogEvidenceComments
Glyma06g01070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01042 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g01042
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01042
>Glyma04g01042.1   sequence type=CDS   gene model=Glyma04g01042   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAAGTTATGAGTCTGAAGAAGACGAAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCAGGAACTAAGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCCAATGCTAATGAGGCACTAAATGATGCTCAATTGCACCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCAATCTTCAACCTTGGAAAGTGGTGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTCTCTGCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCAGCCGGAATAACTCCTCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATCGTGCAACTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCTTAACAGATGCCTTGACAGGGAATTTTTCTAAGGAACCATCAATGGTGGATAAAGCTCAATCGGTGCATGATTTACATTACCCATCATCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGGTCAAGTTGGAGAAAGACTGTCATTAGATCAAAATGGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAACTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGATGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGTACTATGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCTTAGGAAATTCATTCCCAGGCAGTCACGGAGGTTTGCAGGCCTCTGTGGCAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGCATTAGTTCAGCTTCTACAGATAATACCAAGTTGCATCCTCAAGCAACAGCGGTGGTACCTGTTGTGGCTTCAGGGGTTGACATCAAAATGGCAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCAGAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCTTCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTTCCCAGCCAGCTTCCCATGGCCCCTGGGGTGATGCTTCATCTGTGCCAACCACTGTCTCGTTTAACACTGGAAATCCAACTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCGGCTTCAAGTAGTCAGTCAAACATCGCAGCTCCAGCTCCACCCAATATGCCTTGGGGCATGGGCATGTCTGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTACGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGACGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGGCTAGCACCTGGAAATGCCAATCCTGGTTGGACTGCACCGGTTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCATGGGGATCGTGGTGCACAGGGTAGAGATTCTGGTTACGGTGGTAAATCTTGGAATAGGCAGTCATCATTTGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGTAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGACTTTCTACACACTTAG
Predicted protein sequences of Glyma04g01042
>Glyma04g01042.1   sequence type=predicted peptide   gene model=Glyma04g01042   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSYESEEDENEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNQELSRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKQSSTLESGAKNTQPLVASESFSAAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSIVQLRKWSNTGYFPADLRIWRTTEKQDDSILLTDALTGNFSKEPSMVDKAQSVHDLHYPSSYSRKSPQQGIEGQVGERLSLDQNGGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNDATNLPSPTPQTTPGGTMGLAFENKWSPTPVQLPGSLLGNSFPGSHGGLQASVAVHPEHAVQNAEKGSSSQPGISSASTDNTKLHPQATAVVPVVASGVDIKMAGANMQNQVVSSQNSHAEAQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPSQPASHGPWGDASSVPTTVSFNTGNPTASLPTPGFLGMTAPEPWRPPASSSQSNIAAPAPPNMPWGMGMSGNQNMNWGGVVPANMNVNWMPTQVPAPGNSNPGWAAPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWTAPVGNPGMWGSEQSHNGDRFPNHGDRGAQGRDSGYGGKSWNRQSSFGRGGSSRPPFGGQRVVCKYYESGRCRKGTSCDFLHT*






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