Glyma04g01000 - SoyBase

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Report for Sequence Feature Glyma04g01000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	577402
stop:	580508
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34700	AT	Annotation by Michelle Graham. TAIR10: LYR family of Fe/S cluster biogenesis protein \| chr4:16556874-16558362 FORWARD LENGTH=117	SoyBase	E_val: 6.00E-65	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0031966	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane	SoyBase	N/A	ISS
GO:0045271	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG3466	KOG	NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit	JGI		ISS
PTHR12868	Panther	NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT	JGI		ISS
UniRef100_C6SWD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWD4_SOYBN	SoyBase	E_val: 1.00E-78	ISS
UniRef100_G7J7T5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J7T5_MEDTR	SoyBase	E_val: 5.00E-71	ISS

Expression Patterns of Glyma04g01000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01000

Paralog	Evidence	Comments
Glyma06g01030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g008100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01000

Limit To All Plant Sequences

>Glyma04g01000.4   sequence type=transcript   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATTCTGATACGACGTCGTGGCGGGTTTGACTTGGAGGTTGTTTGCCTTTGGCATTTTTTCGCCAATCCCTGAGGAGAACTGAAAAAAGCAGAAAGTATGGCTTCGACGGCAGCGTACCTGGCTCGGCGCGCGGCGCAGAAGGAGAGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTACATCGCCACCTCTTCTACGACGACGCTTCAAACCTCCGCGAAAGGTTCGAGGAGAACAGACACGTGGAAGACCCTGATACCATTGACAGGCTCATAGCGGATGCTGAAGCTTCCTACAACAAGTGGCGCCATCCTGATCCTTATATTGTTCCTTGGGCTCCTGGTGGTTCCAAGTTTACTCGCAACCCAACTCCACCTCAAGGGATTGAGATAGTTTATAATTATGGCCGAGAAGATAATGACTGAAATCTGATTTTTTCTTGCATCCTTACAATGAATAAAGATTGAGGAGTCCATCCCTGCTTATGATGTTGAAAAATTTTATCACCTCCGAACCAGATGGTACCTTGATTTGAATGTTTTTAAGATTCTGTCATTGATACTTGTTAGTGCGTGTCTGAAATTTTACATAAAACTAGTTGCATAAATTGTCTGCAAATTCTGAATATTGGGTCTTCTCGATATCATTTTAACTTTGTTAACTGTTGAGCTACACTATCACCCTATTACAATGGCTAATGAGAGCTAGTTTAGTACTTATTTTGAGTTCTCAGAACAACCATATACACAAGGTATGGAAAGAAATTGGTTAAATAATAAAATTCTGACTCTATGGCAAGTGCAGAGGAATGCCTCATGAAAAGAATAGTTGACAATCCCGTGCAGAATTGAATATCCAATAGGAACGAAACTCCACCCAGTCGTCTTCAAAGTAAATGGAGGGTGATGTATTTTTTTTTTTCTCGATGCGACTGTACCACAAAAAAACAACAACGAAAGGGTTTAATTTTCCGTATGTAGGGCAGTTGAATCGGTGACGGTGGCATTGCATTATAGCCTAAAACCAATATAGCTACTATAATTGTACAATATGATTCAATGTTCTAATGTATACTTATATTGCAAATTTCTC

>Glyma04g01000.5   sequence type=transcript   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATTCTGATACGACGTCGTGGCGGGTTTGACTTGGAGGTTGTTTGCCTTTGGCATTTTTTCGCCAATCCCTGAGGAGAACTGAAAAAAGCAGAAAGTATGGCTTCGACGGCAGCGTACCTGGCTCGGCGCGCGGCGCAGAAGGAGAGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTACATCGCCACCTCTTCTACGACGACGCTTCAAACCTCCGCGAAAGGTTCGAGGAGAACAGACACGTGGAAGACCCTGATACCATTGACAGGCTCATAGCGGATGCTGAAGCTTCCTACAACAAGTGGCGCCATCCTGATCCTTATATTGTTCCTTGGGCTCCTGGTGGTTCCAAGTTTACTCGCAACCCAACTCCACCTCAAGGGATTGAGATAGTTTATAATTATGGCCGAGAAGATAATGACTGAAATCTGATTTTTTCTTGCATCCTTACAATGAATAAAGGTCTGCAATCAAACTGTTCTGTATTACTAGATTGTGGATTAAATGACCTTCATTTATGTGATGAGCATAAATTGATACAGATTGAGGAGTCCATCCCTGCTTATGATGTTGAAAAATTTTATCACCTCCGAACCAGATGGTACCTTGATTTGAATGTTTTTAAGATTCTGTCATTGATACTTGTTAGTGCGTGTCTGAAATTTTACATAAAACTAGTTGCATAAATTGTCTGCAAATTCTGAATATTGGGTCTTCTCGATATCATTTTAACTTTGTTAACTGTTGAGCTACACTATCACCCTATTACAATGGCTAATGAGAGCTAGTTTAGTACTTATTTTGAGTTCTCAGAACAACCATATACACAAGGTATGGAAAGAAATTGGTTAAATAATAAAATTCTGACTCTATGGCAAGTGCAGAGGAATGCCTCATGAAAAGAATAGTTGACAATCCCGTGCAGAATTGAATATCCAATAGGAACGAAACTCCACCCAGTCGTCTTCAAAGTAAATGGAGGGTGATGTATTTTTTTTTTTCTCGATGCGACTGTACCACAAAAAAACAACAACGAAAGGGTTTAATTTTCCGTATGTAGGGCAGTTGAATCGGTGACGGTGGCATTGCATTATAGCCTAAAACCAATATAGCTACTATAATTGTACAATATGATTCAATGTTCTAATGTATACTTATATTGCAAATTTCTC

Coding sequences of Glyma04g01000

Limit To All Plant Sequences

>Glyma04g01000.3   sequence type=CDS   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGACGGCAGCGTACCTGGCTCGGCGCGCGGCGCAGAAGGAGAGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTACATCGCCACCTCTTCTACGACGACGCTTCAAACCTCCGCGAAAGGTTCGAGGAGAACAGACACGTGGTTCGTTTCCCTCTTTTCACTTCCCTTCCCTTCCAAATCATCGCATCTCTAACATGGTTTCGATCCACACATCCCTTGTCATATTTTGTACCCTAA

>Glyma04g01000.4   sequence type=CDS   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGACGGCAGCGTACCTGGCTCGGCGCGCGGCGCAGAAGGAGAGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTACATCGCCACCTCTTCTACGACGACGCTTCAAACCTCCGCGAAAGGTTCGAGGAGAACAGACACGTGGAAGACCCTGATACCATTGACAGGCTCATAGCGGATGCTGAAGCTTCCTACAACAAGTGGCGCCATCCTGATCCTTATATTGTTCCTTGGGCTCCTGGTGGTTCCAAGTTTACTCGCAACCCAACTCCACCTCAAGGGATTGAGATAGTTTATAATTATGGCCGAGAAGATAATGACTGA

>Glyma04g01000.5   sequence type=CDS   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGACGGCAGCGTACCTGGCTCGGCGCGCGGCGCAGAAGGAGAGGGTTCGGATCCTCTACCGCCGTGCCCTCAAAGACACTCTCAACTGGGCCGTACATCGCCACCTCTTCTACGACGACGCTTCAAACCTCCGCGAAAGGTTCGAGGAGAACAGACACGTGGAAGACCCTGATACCATTGACAGGCTCATAGCGGATGCTGAAGCTTCCTACAACAAGTGGCGCCATCCTGATCCTTATATTGTTCCTTGGGCTCCTGGTGGTTCCAAGTTTACTCGCAACCCAACTCCACCTCAAGGGATTGAGATAGTTTATAATTATGGCCGAGAAGATAATGACTGA

Predicted protein sequences of Glyma04g01000

Limit To All Plant Sequences

>Glyma04g01000.3   sequence type=predicted peptide   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVVRFPLFTSLPFQIIASLTWFRSTHPLSYFVP*

>Glyma04g01000.4   sequence type=predicted peptide   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREDND*

>Glyma04g01000.5   sequence type=predicted peptide   gene model=Glyma04g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREDND*

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