Glyma04g00950 - SoyBase

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Report for Sequence Feature Glyma04g00950

Feature Type:	gene_model
Chromosome:	Gm04
Start:	537893
stop:	540270
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34720	AT	Annotation by Michelle Graham. TAIR10: ATPase, F0/V0 complex, subunit C protein \| chr4:16568223-16569165 REVERSE LENGTH=164	SoyBase	E_val: 7.00E-109	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0015991	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0033177	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain	SoyBase	N/A	ISS
GO:0033179	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain	SoyBase	N/A	ISS
GO:0015078	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0046961	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism	SoyBase	N/A	ISS
KOG0232	KOG	Vacuolar H+-ATPase V0 sector, subunits c/c'	JGI		ISS
PTHR10263	Panther	VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT	JGI		ISS
PF00137	PFAM	ATP synthase subunit C	JGI		ISS
UniRef100_I1JCJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCJ3_SOYBN	SoyBase	E_val: 1.00E-107	ISS
UniRef100_O22552	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase 16 kDa proteolipid subunit n=1 Tax=Vigna radiata var. radiata RepID=VATL_VIGRR	SoyBase	E_val: 3.00E-107	ISS

Expression Patterns of Glyma04g00950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00950

Paralog	Evidence	Comments
Glyma06g00980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g007500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00950

Limit To All Plant Sequences

>Glyma04g00950.2   sequence type=transcript   gene model=Glyma04g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGCCAAAGGTGATAAACAATCCAAAAATTTTTAAGAAAAAAAAGGAGAGAAAATTTGTAAAGAAAAATTCATATGTAGAGAAAAAACATTTTAATGACATAAACCAACTGAAACACTCTATACCGAATCCAAGTTCTGTATTTCCTTCTCTTTTCCAATTGTTTGAGCGTGAATTTTTGCGTTAATGAAGTCTGAAACCTATGATAAGGGGATATCTGTTGATGACTGGAAAATACTGGTAAAGTGGTAATAGGCAAAGAAGTGAAGAATCACAATTGGTTTGGAGGCCCATCGCATTGAGGCAAGTAGAAAATTGACCCGCCCAAGTGGAGATTCAAGTCGGGTACCGAACGTGCGACTATAAAGGGAATGAACGTGGACACCCCACGCTTTCTTCACGGCAACAGAAGAATAATCAAATTTCTCAGATCTATCCGACGTCGTCGCAGATCCACCAACCGTTATGGCTGCCTTCAGCGGTGATGAAACGGCTCCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTACTCCTTCCACTCTCTTCAATTCCCCCAATCACTTCCATTAGATCCGTATTTACCGTTTCATTATTTATGTAATCCGTTCCTAAAATTGACTTTTAATCCAATTTCATGTTCCACTGCTCAGAACCGTATATGATTTTAGGTGTTGAATTTGGAACCATTGATGTTGGAGATTCAATTAGTTACTGCAAATCGTTAAGTTTGATATATGAAATCTGAAATTTGATTGATCTGTGTCTGTGAGGAAATCGGAATAATTTCACTCATGTGAAAGTGATTGATCGATCGAATCTTAATCTTAGGGTTGTTTGAAGTGATAAAATCTGTGAGGAATTTCATTTGTATTTGAACTGTTGATAGGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACCGGTATTAATCCAAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGACTAAGAAAGGAGTTGTGCTGCAAAATATTCTTTGACCACCCATCTGTTTTAACCTCTTTTTAGAGGGGGTGAGGGAGGTAATTATTAGTTTTTCCGAGCTTAGCAATGTTCAGGCAGCATTTTCAGGCTTTAGCAATTGTGTGAAAGTTCAATTTACCATTTGTGGTGTTTGTTTGTGTAATTAGGTTTATGTTTACTTAATAAAGCTTCTTAAGCTTCCTCTTTTTGTTTTTTTACTTTATTGATTGTATTTTGCCATATCTTCTGACCTTTATATATATTTTTTGGGCTGCTGAAACTGGTGCATGTAATGATTTGATTTGGCTAGCAATGCAACGTATTTCATGGGTCTTTCCATGTTGGATGTTGGTAACAGCTGCTTTTTGTGTTATATTCTCGTAGTTTATGGTTAGG

Coding sequences of Glyma04g00950

Limit To All Plant Sequences

>Glyma04g00950.1   sequence type=CDS   gene model=Glyma04g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTTCAGCGGTGATGAAACGGCTCCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACCGGTATTAATCCAAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGACTAA

>Glyma04g00950.2   sequence type=CDS   gene model=Glyma04g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACCGGTATTAATCCAAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGACTAA

Predicted protein sequences of Glyma04g00950

Limit To All Plant Sequences

>Glyma04g00950.1   sequence type=predicted peptide   gene model=Glyma04g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*

>Glyma04g00950.2   sequence type=predicted peptide   gene model=Glyma04g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*

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