Glyma04g00940 - SoyBase

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Report for Sequence Feature Glyma04g00940

Feature Type:	gene_model
Chromosome:	Gm04
Start:	531554
stop:	537087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38890	AT	Annotation by Michelle Graham. TAIR10: FMN-linked oxidoreductases superfamily protein \| chr4:18135909-18139100 REVERSE LENGTH=691	SoyBase	E_val: 0	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0017150	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA dihydrouridine synthase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG2333	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR11082	Panther	TRNA-DIHYDROURIDINE SYNTHASE	JGI		ISS
PTHR11082:SF8	Panther	NITROGEN REGULATION PROTEIN NIFR3-RELATED	JGI		ISS
PF01207	PFAM	Dihydrouridine synthase (Dus)	JGI		ISS
UniRef100_G7J7T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA-dihydrouridine synthase 3-like protein n=1 Tax=Medicago truncatula RepID=G7J7T8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AC7 related cluster n=1 Tax=unknown RepID=UPI0002339AC7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g007400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00940

Limit To All Plant Sequences

>Glyma04g00940.2   sequence type=CDS   gene model=Glyma04g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCGAGATATTTTGTTGAGTTTCATTAAACCCTACTATTTGTCTTCAACAAAGAAACACGAACGGAACAACATGGACGAGGAGGAGCCGCGTGACGAAGGACAACAAGGAGGTTCTGTCGAGCAAAGCCCAGAGCAACTGGTGGCCCGTGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGTCCTCCTCCCGTTCGCTCTTCCTCTCCAAACGACGGCGTTTCCATTCCCAATGATAACAACAAGACCTCTGTTCTCGCCAAGGAGAAGAAGTCCAAGCGCCAACTCAAACGCGAACGTCGTCTGGAACAAAAGTCAGCACGAAACCTGTGTCCCGAAATTGCCAAAACAGGGGATGTTAGTTCATGTCCTTATAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGCCTTCAAGGCACAGAAACCTGCTGATCTAGAGGGGCAATGTCCTTTCTTTAAATCTGGAGGCGCTTGCCCATATGGTTTAGGGTGTAGATTTTCGAGTACGCATGAAGATGGTGTGCCTTCTGCCAATCTGAATGGTCTTAAGAATAATTCCGAGGTGAATGGGTTGAGCAAACATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATGCCCAACTCAAAAGTCTAGGCCTCGTGGGAACCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGAAGGTGACACTGGTTCAAATAAGTGTGATCATTCTGATTACAGTGGATCTTGTGTTGTTACCTCCGACTCATGTTGTAAGTTGGAATGCCCTGAAGAAGTTATGAAAGATGATGACAATGACATAGATGGAAAATCTGAATCTGATGTACTTTGCCCCCAGAAGAGAAGAAAAATTGCAGAAAATTGTGGTCCTATGGATGCAGAAAATGAAGGTGTTAGTGTTACTGAGCAAATTGTTGAAAGAAGTTGCACAAAATCTGAACCCGAAGCTGGAACCGATGCTCTAACCCCAGAAACTGATCTAAGCCTGAAGCTGCACTCACGTGAAAAGAAGCTGATTGATTTTAGGGAGAAGTTGTATCTCGCACCCTTGACCACTGTTGGCAATCTCCCTTTCCGAAGAGTTTGCAAAGTATTAGGAGCTGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCCTCTGAATGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCTGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAGTGTACAATAGATTTTATTGATATAAATATGGGTTGTCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTTGCTTCAGGCACAGCGGAAAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGTGCCAGTGCTGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTACGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGGTTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACTGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGCGAGCGTCTAAATATTCTCAAAGATTTTGTGAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTCAGGTATATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGATTAAACTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCCGATTGGATACGAATATCAGAGATGCTACTTGGCAAGGTTCCAGATGGCTTTACATTTGCTCCTAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTGA

Predicted protein sequences of Glyma04g00940

Limit To All Plant Sequences

>Glyma04g00940.2   sequence type=predicted peptide   gene model=Glyma04g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRDILLSFIKPYYLSSTKKHERNNMDEEEPRDEGQQGGSVEQSPEQLVARAIAPVKKDFLRPPPVRSSSPNDGVSIPNDNNKTSVLAKEKKSKRQLKRERRLEQKSARNLCPEIAKTGDVSSCPYKDKCRFSHDLEAFKAQKPADLEGQCPFFKSGGACPYGLGCRFSSTHEDGVPSANLNGLKNNSEVNGLSKHVQKLLWKNKMSFSKADAQLKSLGLVGTSKSKRNDLENKDEGDTGSNKCDHSDYSGSCVVTSDSCCKLECPEEVMKDDDNDIDGKSESDVLCPQKRRKIAENCGPMDAENEGVSVTEQIVERSCTKSEPEAGTDALTPETDLSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTAEKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMVARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG*

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