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Report for Sequence Feature Glyma04g00930

Feature Type:gene_model
Chromosome:Gm04
Start:525026
stop:527055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16570AT Annotation by Michelle Graham. TAIR10: GLN phosphoribosyl pyrophosphate amidotransferase 1 | chr2:7180424-7182124 REVERSE LENGTH=566 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009113GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process SoyBaseN/AISS
GO:0009116GO-bp Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009532GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0004044GO-mf Annotation by Michelle Graham. GO Molecular Function: amidophosphoribosyltransferase activity SoyBaseN/AISS
KOG0572 KOG Glutamine phosphoribosylpyrophosphate amidotransferase JGI ISS
PTHR11907Panther AMIDOPHOSPHORIBOSYLTRANSFERASE JGI ISS
PF00156PFAM Phosphoribosyl transferase domain JGI ISS
PF00310PFAM Glutamine amidotransferases class-II JGI ISS
UniRef100_I1JSI1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Amidophosphoribosyltransferase n=1 Tax=Glycine max RepID=I1JSI1_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JSI1UniRef Annotation by Michelle Graham. Best UniRef hit: Amidophosphoribosyltransferase n=1 Tax=Glycine max RepID=I1JSI1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g00930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g007300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00930
>Glyma04g00930.1   sequence type=CDS   gene model=Glyma04g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCGTCTAATCTCTCCACTCTCTCCTCCTCTTCCCTCTCCAAACCCTCGTCCTCTTTCCCTTTCCGCAACACACCAACAAACAACAACGCTTCTTTTCTCCACAACAAATCCCTTCCAAACCAAAACTCTCTCTCTCACAAACTCTCTTCCCCTCTGCCTCTCGCATGCAACCCAAAAAACCAAAACACTTGTGTCTTCTTCGACGACGAAGACCAAAAGCCCCGTGAAGAGTGCGGCGTGGTGGGCATCTACGGCGACCCGGAAGCCTCCCGTCTCTGCTCCCTGGCCCTCCACGCCCTCCAGCACCGCGGCCAAGAAGGTGCCGGCATCGTAGCCGTCCACGACAACCACCTCCAATCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCGACGAGTCCAAGCTCTCCCGCCTCCCCGGCACCTCGGCCATTGGCCACGTCCGCTACTCCACCGCCGGCCAATCCATGCTCAAAAACGTCCAACCCTTCCTGGCCGACTACCGCTTCGGCTCCGTCGCCGTCGCTCACAACGGCAACTTCGTCAACTACCGCTCCCTCCGAGCCAGACTCGAACACAACAACGGCTCCATCTTCAACACCACCTCCGACACCGAGGTTGTCCTCCACCTCATCGCCACTTCAAAACACAGGCCATTCCTCCTCAGAATCGTGGACGCCTGCGAGCATCTCCAAGGCGCCTACTCCCTCGTATTCGTCACGGAGGACAAGCTCGTCGCCGTCAGAGACCCCTTCGGGTTCCGACCCTTGGTGATGGGTAGGAGAACCAACGGCGCTGTAGTTTTGGCCTCCGAGACATGCGCGCTTGATTTAATCGAAGCCACGTACGAGAGAGAGGTGTACCCGGGTGAAGTTATCGTGGTGGACCACACTGGAATCCAATCCCTCTGCCTCGTGTCTCATCCTGAGCCAAAACAATGCATCTTCGAGCACATATACTTCGCGCTTCCTAACTCTGTTGTTTTCGGGAGGTCCGTGTACGAGTCTAGAAAAAAATTCGGAGAAATACTAGCCTCTGAGAGTCCCGTTGAGTGTGACGTTGTGATCGCGGTTCCTGATTCTGGCGTTGTGGCTGCGCTTGGTTATGCTGCAAAAGCTGGGGTACCCTTTCAGCAGGGGTTGATTAGGTCCCACTATGTAGGGAGGACTTTCATCGAGCCTTCGCAGAAAATTAGGGATTTTGGAGTGAAGCTTAAACTGTCTCCGGTTCATGCTGTGCTTGAAGGGAAGAGGGTTGTGGTTGTGGATGATTCCATCGTGAGAGGCACCACGTCGTCCAAGATTGTGAGGCTCTTGAAGGAGGCCGGTGCCAAGGAAGTTCACATGAGGATTGCATGTCCTCCTATTGTTGCTTCGTGTTATTATGGAGTTGACACACCCAGTTCAGAGGAGTTGATATCCAACCGGATGAGTGTGGAGGAGATAAGGAAGTTTATTGGGTCGGATTCGCTGGCTTTTCTTCCCTTGGATAAGTTGAAGACATTGTTAGGGGATGATGCTCTTAACTACTGCTATGCTTGCTTCTCTGGGAAGTACCCTGTTGAGCCTGAGGAACTTCAAATGAAGAGGCTTGGTGTTGCTCACTTCAATTGGGACGACGACTTCAATGGGAATTTCGAATCTATTGATGTGGGGGGTTGGGTTACAAATCAAGATGGGTTTAAGATTGGTAGTGTCTAA
Predicted protein sequences of Glyma04g00930
>Glyma04g00930.1   sequence type=predicted peptide   gene model=Glyma04g00930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASNLSTLSSSSLSKPSSSFPFRNTPTNNNASFLHNKSLPNQNSLSHKLSSPLPLACNPKNQNTCVFFDDEDQKPREECGVVGIYGDPEASRLCSLALHALQHRGQEGAGIVAVHDNHLQSVTGVGLVSDVFDESKLSRLPGTSAIGHVRYSTAGQSMLKNVQPFLADYRFGSVAVAHNGNFVNYRSLRARLEHNNGSIFNTTSDTEVVLHLIATSKHRPFLLRIVDACEHLQGAYSLVFVTEDKLVAVRDPFGFRPLVMGRRTNGAVVLASETCALDLIEATYEREVYPGEVIVVDHTGIQSLCLVSHPEPKQCIFEHIYFALPNSVVFGRSVYESRKKFGEILASESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVHAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIVASCYYGVDTPSSEELISNRMSVEEIRKFIGSDSLAFLPLDKLKTLLGDDALNYCYACFSGKYPVEPEELQMKRLGVAHFNWDDDFNGNFESIDVGGWVTNQDGFKIGSV*






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