Glyma04g00890 - SoyBase

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Report for Sequence Feature Glyma04g00890

Feature Type:	gene_model
Chromosome:	Gm04
Start:	489441
stop:	490449
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38840	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr4:18125174-18125473 REVERSE LENGTH=99	SoyBase	E_val: 1.00E-35	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_B9HRD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein n=1 Tax=Populus trichocarpa RepID=B9HRD4_POPTR	SoyBase	E_val: 2.00E-39	ISS
UniRef100_I1JSH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSH7_SOYBN	SoyBase	E_val: 8.00E-72	ISS

Expression Patterns of Glyma04g00890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00890

Paralog	Evidence	Comments
Glyma06g00910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g006800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00890

Limit To All Plant Sequences

>Glyma04g00890.1   sequence type=CDS   gene model=Glyma04g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTTTGCCTAGTGTTTTGAGTGCTAAATACATTCTTCGCCGATCAAATCTGTTTGCAAATCATGCAGCTACAACGTCACTGGATGTGCCTAAAGGGCACTTTGCTGTGTATGTAGGAGAGGGTGAAAAGAGGAGATATGTGATACCAGTGTCATATTTGAATCAGCCTTCATTTCAAGAACTGCTAAGTATAGCGGAGGAAGAATTTGGCTTCAGTCATCCAATGGGAGGCCTCATAATTCCCTGCACAGAAGAAAATTTCCTTAACATCACCTCTGGTTTAATAGGCTATGACATGATACAACCAAAGTAA

Predicted protein sequences of Glyma04g00890

Limit To All Plant Sequences

>Glyma04g00890.1   sequence type=predicted peptide   gene model=Glyma04g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRLPSVLSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKRRYVIPVSYLNQPSFQELLSIAEEEFGFSHPMGGLIIPCTEENFLNITSGLIGYDMIQPK*

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