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Report for Sequence Feature Glyma04g00880

Feature Type:gene_model
Chromosome:Gm04
Start:485812
stop:486099
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18020AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr5:5966305-5966580 REVERSE LENGTH=91 SoyBaseE_val: 2.00E-36ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_B9HRD2UniRef Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein n=1 Tax=Populus trichocarpa RepID=B9HRD2_POPTR SoyBaseE_val: 3.00E-39ISS
UniRef100_I1JSH6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSH6_SOYBN SoyBaseE_val: 3.00E-63ISS

Expression Patterns of Glyma04g00880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g00880 not represented in the dataset
Glyma04g00880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g006700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00880
>Glyma04g00880.1   sequence type=CDS   gene model=Glyma04g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTTTGCCTTGTGTTTTGAGTGCTAAACACATTTTTCGCCGATCTAATGCAGCTGCAACATCACTGGATGTGCCTAAAGGGCACTTTGCTGTGTACGTAGGAGAGGGTGAAAAGAAGAGATTTGTGATACCAGTGTCATATTTGAATCAGCCTTCATTTCAAGAACTACTAAGTATAGCCGAGGAAGAATTTGGCTTCAGTCATCCAATGGGTGGCCTTACTATTCCCTGCACAGAAGACATTTTCCTTAACATCACCTCTGCCTTACGTAGGCTATGA
Predicted protein sequences of Glyma04g00880
>Glyma04g00880.1   sequence type=predicted peptide   gene model=Glyma04g00880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRLPCVLSAKHIFRRSNAAATSLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPSFQELLSIAEEEFGFSHPMGGLTIPCTEDIFLNITSALRRL*






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