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Report for Sequence Feature Glyma04g00840

Feature Type:gene_model
Chromosome:Gm04
Start:472775
stop:473540
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18060AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr5:5976030-5976302 FORWARD LENGTH=90 SoyBaseE_val: 2.00E-32ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_B9HRD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein n=1 Tax=Populus trichocarpa RepID=B9HRD6_POPTR SoyBaseE_val: 1.00E-31ISS
UniRef100_UPI000233A691UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A691 related cluster n=1 Tax=unknown RepID=UPI000233A691 SoyBaseE_val: 3.00E-52ISS

Expression Patterns of Glyma04g00840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g00840 not represented in the dataset
Glyma04g00840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g006500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00840
>Glyma04g00840.2   sequence type=CDS   gene model=Glyma04g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAGTTTGCGTGGTCTTCAAAGGCGTGTGGATGTCCCAAAGGGCAGTGTAGCAGTGTATGTAGGAGAAAGCCAAAAGAAGCGCTTTGTGGTTCCCATATCATACTTGAACCAACCTTCATTTCTTGAGTTGCTGAGTCAAGCTGAGCAAGAATTTGGATTTGATCATCCAATGGGTGGCCTCACACTTCCTTACACAGAAGAAGTCTTCCTGGATGTCACTTCTCGCTTGCACAGGCGATAA
Predicted protein sequences of Glyma04g00840
>Glyma04g00840.2   sequence type=predicted peptide   gene model=Glyma04g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSLRGLQRRVDVPKGSVAVYVGESQKKRFVVPISYLNQPSFLELLSQAEQEFGFDHPMGGLTLPYTEEVFLDVTSRLHRR*






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