Glyma04g00830 - SoyBase

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Report for Sequence Feature Glyma04g00830

Feature Type:	gene_model
Chromosome:	Gm04
Start:	469859
stop:	470686
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18060	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr5:5976030-5976302 FORWARD LENGTH=90	SoyBase	E_val: 1.00E-33	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_G7JL36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein-like protein n=1 Tax=Medicago truncatula RepID=G7JL36_MEDTR	SoyBase	E_val: 9.00E-34	ISS
UniRef100_I1JSH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSH2_SOYBN	SoyBase	E_val: 2.00E-70	ISS

Expression Patterns of Glyma04g00830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00830

Paralog	Evidence	Comments
Glyma06g00851	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g006400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00830

Limit To All Plant Sequences

>Glyma04g00830.1   sequence type=CDS   gene model=Glyma04g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACAGTCCAAATTAAGCAATTCAAGTCCAAGAATTCTCTAAGCATCAAAAAAGAATTAAGCATAATGGGTTTCAGTTTGCGTGGTCTTCAAAGGCGTGTGGATGTCCCAAAGGGCCGTGTAGCAGTGTATGTAGGAGAAAATCAAAAGAAGCGCTTTGTGATTCCCATATCATACTTGAACCAACCTTCATTTCTTGAGTTGTTGAATCAAGCTGAGCAAGAATTTGGATTTGATCATCCAATGGGTGGCCTCACAATTCCTTGCAATGAGAATGTCTTCCTAGATGTCACTTCTCGCTTGCATAGCCGATAG

Predicted protein sequences of Glyma04g00830

Limit To All Plant Sequences

>Glyma04g00830.1   sequence type=predicted peptide   gene model=Glyma04g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTVQIKQFKSKNSLSIKKELSIMGFSLRGLQRRVDVPKGRVAVYVGENQKKRFVIPISYLNQPSFLELLNQAEQEFGFDHPMGGLTIPCNENVFLDVTSRLHSR*

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