Glyma04g00820 - SoyBase

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Report for Sequence Feature Glyma04g00820

Feature Type:	gene_model
Chromosome:	Gm04
Start:	466641
stop:	467392
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21210	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr2:9085513-9085809 REVERSE LENGTH=98	SoyBase	E_val: 3.00E-33	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_G7J7U4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 6B n=1 Tax=Medicago truncatula RepID=G7J7U4_MEDTR	SoyBase	E_val: 1.00E-46	ISS
UniRef100_I1JSH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSH1_SOYBN	SoyBase	E_val: 2.00E-56	ISS

Expression Patterns of Glyma04g00820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00820

Paralog	Evidence	Comments
Glyma06g00831	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g006300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00820

Limit To All Plant Sequences

>Glyma04g00820.2   sequence type=CDS   gene model=Glyma04g00820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATTCGTCTGCCAATATTCATGGCTCTTCATGCCAACAAGATGTTCAAGTGGCAGCAGCATCTCCATAGTAGAAACCACTCGAATGTTCCAAAGGGCCACATAGCAGTGTATGTTGGAGAGGCTCAAAAGAAAAGGTTTGTGGTTCCAATATCTTACTTGAACCATCCTTCGTTTGTTGACTTGCTAAACCGAGCTGAGGAAGAGTTTGGCTACAATCATCCAATGGGCGGTCTCACAATCCCTTGTAAAGAAGAGGCATTCATCACTCTCACCTCTCAACTACGTGCCTCCTGA

Predicted protein sequences of Glyma04g00820

Limit To All Plant Sequences

>Glyma04g00820.2   sequence type=predicted peptide   gene model=Glyma04g00820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIRLPIFMALHANKMFKWQQHLHSRNHSNVPKGHIAVYVGEAQKKRFVVPISYLNHPSFVDLLNRAEEEFGYNHPMGGLTIPCKEEAFITLTSQLRAS*

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