Glyma04g00810 - SoyBase

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Report for Sequence Feature Glyma04g00810

Feature Type:	gene_model
Chromosome:	Gm04
Start:	449216
stop:	455823
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38810	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr4:18115607-18118860 REVERSE LENGTH=375	SoyBase	E_val: 2.00E-162	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
UniRef100_G7J7U7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SnRK2 calcium sensor n=1 Tax=Medicago truncatula RepID=G7J7U7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JSG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSG9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00810

Paralog	Evidence	Comments
Glyma06g00820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g006200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00810

Limit To All Plant Sequences

>Glyma04g00810.3   sequence type=transcript   gene model=Glyma04g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAGGGGACAAAGCAGGTCTGCTTGGTGGTGGATGGAAGTAACTTTCCTTTCCATGAGCTAAAACAAACAAGACCAACGACCAACGTTTTTTGAGCACATGTTGTGTTTGCCCTTTTTCTCTTACATTTATATATGATGATTAAGATTTACGTGTATATATATACTTTGTTTGGGGAGCCACGTGTGGGGTTCACAGTTCACACCATTGCTGACAGATACAATAATAATGACCTTCTTCCTTTCCTTCCTCCTGCTCCTCCACTGTGCTTAAACTCATTAATAAACCAAACACAGGCAAAAGAAAAGGGTGTTACTGTGTTAGTGTGTTACCTTTACCACTCAGAAACAATGGAGAGTAAGAGAAAAAATGGTGGGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAGTTGGATAAAGACAGAGATGGCAAACTCTCCATGAAGGAGCTTGAACCTGCCGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCAAGACCCTATTGTTATACTTCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTTTCTCAGATTGAGTCCCCTAGTGGATCCCTTCGTGAACATGTGATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGCTGGCCCTGCTTTGGACAAGCCTGCTGCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACGTTGAACTTAGCTTTAGAGAATCTGCCGAAAGATCGCAACGTAAAAATATCAAAGGACTATCTGCAGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATTGATAAGGTTATTGTTGAAGCCTTTAAGATGGTGAATGCAGATGACACCAAGACAGTTAAAGAAGACGAATTCAAGAAAATTTTAAGTGAAATACTGGGTAGTATCACGTTACAGTTAGAGGCAAATCCCATATCTGTTTCTTCCAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTAGTGAAACAGCATAATTGTCTCAAGTTTGTGACGGGTCAAAAACTAAGTACAATAAGATTTTTTATTCATGGAAATTGTTACTGACATAGTTTATCTTTTAAGAAATCACTTTGTATGATGTGGATTATTTATGAATCTGAAAATTATAGAATGCCATGGAAAGAAAAAAAAATGTTAATTATCCCTTGCCGGGCTTGTTTATCACTTCAGTTGTAATTTAGATAGATGTGCTGTAC

Coding sequences of Glyma04g00810

Limit To All Plant Sequences

>Glyma04g00810.2   sequence type=CDS   gene model=Glyma04g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTAAGATTTACGTGTATATATATACTTTGTTTGGGGAGCCACGTGTGGGGTTCACAGTTCACACCATTGCTGACAGATACAATAATAATGACCTTCTTCCTTTCCTTCCTCCTGCTCCTCCACTGTGCTTAAACTCATTAATAAACCAAACACAGGCAAAAGAAAAGGGTGTTACTGTGTTAGTGTGTTACCTTTACCACTCAGAAACAATGGAGAGTAAGAGAAAAAATGGTGGGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAGTTGGATAAAGACAGAGATGGCAAACTCTCCATGAAGGAGCTTGAACCTGCCGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCAAGACCCTATTGTTATACTTCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTTTCTCAGATTGAGTCCCCTAGTGGATCCCTTCGTGAACATGTGATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGCTGGCCCTGCTTTGGACAAGCCTGCTGCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGGTTTATTTTATTGTGATTCATTGCGATATCTTTCTTGTTTTGAATTTACTTTTTTTAAACATCCATACATGA

>Glyma04g00810.3   sequence type=CDS   gene model=Glyma04g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTAAGATTTACGTGTATATATATACTTTGTTTGGGGAGCCACGTGTGGGGTTCACAGTTCACACCATTGCTGACAGATACAATAATAATGACCTTCTTCCTTTCCTTCCTCCTGCTCCTCCACTGTGCTTAAACTCATTAATAAACCAAACACAGGCAAAAGAAAAGGGTGTTACTGTGTTAGTGTGTTACCTTTACCACTCAGAAACAATGGAGAGTAAGAGAAAAAATGGTGGGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAGTTGGATAAAGACAGAGATGGCAAACTCTCCATGAAGGAGCTTGAACCTGCCGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCAAGACCCTATTGTTATACTTCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTTTCTCAGATTGAGTCCCCTAGTGGATCCCTTCGTGAACATGTGATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGCTGGCCCTGCTTTGGACAAGCCTGCTGCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACGTTGAACTTAGCTTTAGAGAATCTGCCGAAAGATCGCAACGTAAAAATATCAAAGGACTATCTGCAGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATTGATAAGGTTATTGTTGAAGCCTTTAAGATGGTGAATGCAGATGACACCAAGACAGTTAAAGAAGACGAATTCAAGAAAATTTTAAGTGAAATACTGGGTAGTATCACGTTACAGTTAGAGGCAAATCCCATATCTGTTTCTTCCAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTAGTGAAACAGCATAA

Predicted protein sequences of Glyma04g00810

Limit To All Plant Sequences

>Glyma04g00810.2   sequence type=predicted peptide   gene model=Glyma04g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIKIYVYIYTLFGEPRVGFTVHTIADRYNNNDLLPFLPPAPPLCLNSLINQTQAKEKGVTVLVCYLYHSETMESKRKNGGKGEIVDGSKIMELVGNEQVFSNFVDHKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKQDPIVILRMDGEDLLEFVNGPSYEAEMASIFSQIESPSGSLREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQAGPALDKPAAQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGRGVKRLLSNKFELDRVYFIVIHCDIFLVLNLLFLNIHT*

>Glyma04g00810.3   sequence type=predicted peptide   gene model=Glyma04g00810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIKIYVYIYTLFGEPRVGFTVHTIADRYNNNDLLPFLPPAPPLCLNSLINQTQAKEKGVTVLVCYLYHSETMESKRKNGGKGEIVDGSKIMELVGNEQVFSNFVDHKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKQDPIVILRMDGEDLLEFVNGPSYEAEMASIFSQIESPSGSLREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQAGPALDKPAAQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGRGVKRLLSNKFELDRTLNLALENLPKDRNVKISKDYLQVALDLVSPSAGLPPVGAIEEIDKVIVEAFKMVNADDTKTVKEDEFKKILSEILGSITLQLEANPISVSSNSVVHEPLGSSSTLLQPSSETA*

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