Glyma04g00800 - SoyBase

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Report for Sequence Feature Glyma04g00800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	440659
stop:	444224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29810	AT	Annotation by Michelle Graham. TAIR10: COBRA-like protein 2 precursor \| chr3:11728212-11730158 FORWARD LENGTH=441	SoyBase	E_val: 7.00E-104	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_G7J7U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COBRA-like protein n=1 Tax=Medicago truncatula RepID=G7J7U8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K710	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K710_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00800

Paralog	Evidence	Comments
Glyma06g00810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g006100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00800

Limit To All Plant Sequences

>Glyma04g00800.1   sequence type=CDS   gene model=Glyma04g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGTTCATCTTACAGCGGCTCTCAGATGCCACATTCATGCAAGAAAGATCCCACCATAGTTGATCTCTCTCTAGATGCCTCACAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTCCCTGGTCTATTGATCCTTTCTATGCATTCTCTTCATTTGAACTTGAAGTGCGCAACGTGGGAGATAACCCACTTGGACAAGCACCTATTAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCTCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCTTAGCAAACACAATACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCCGCCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCAACTTGCATAAGGTCTAGTTCCTTGTCACGGTCTAATGAGGACAACACAATTGATGAAATGATTGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAATTATATGAACCAATGGAGGGTGAAGCTTACAATTTCTAACTACAACTACAACAGAAACTACTCAAACTGGAACGTACTCGTTCAACATCCTGGTTTCACCCAAAAAGCGAGAACTTACAGCTTCAACAGCACTAAACTTCCCACCCTTGGGCTCCAAGATGGAGTTTCCCTTTTTTGGGGGATAGATTATTACAACAATGAGCTAGTGCATTCTGATAAGGATGGAGTGGGTCTTGTGACTACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGTAAGTAATGGATGGGCATTTCCGAGAAGAATATATTTCAACGGGGAGAACTGCGAAATGCCTTTACCTGACACGTTTCCTATGTTACCAAATGGTGGCTCCATTTTAAGAGCTACTTACTGTGGTTTCAGTCTTTTATATATCCTTTTGTTTCTTGCCCTACTACTGATCCTTTGGTTTTGA

Predicted protein sequences of Glyma04g00800

Limit To All Plant Sequences

>Glyma04g00800.1   sequence type=predicted peptide   gene model=Glyma04g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDASQNRSEHCCRGGLLSPWSIDPFYAFSSFELEVRNVGDNPLGQAPINLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVLRTWKSTCAYSSFLANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTATCIRSSSLSRSNEDNTIDEMIECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYNYNRNYSNWNVLVQHPGFTQKARTYSFNSTKLPTLGLQDGVSLFWGIDYYNNELVHSDKDGVGLVTTEILLDKDPNSFTVSNGWAFPRRIYFNGENCEMPLPDTFPMLPNGGSILRATYCGFSLLYILLFLALLLILWF*

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