Glyma04g00710 - SoyBase

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Report for Sequence Feature Glyma04g00710

Feature Type:	gene_model
Chromosome:	Gm04
Start:	404061
stop:	405557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21140	AT	Annotation by Michelle Graham. TAIR10: proline-rich protein 2 \| chr2:9060868-9062035 REVERSE LENGTH=321	SoyBase	E_val: 5.00E-38	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
PF01190	PFAM	Pollen proteins Ole e I like	JGI		ISS
UniRef100_Q9M6T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline-rich protein n=1 Tax=Nicotiana glauca RepID=Q9M6T7_NICGL	SoyBase	E_val: 6.00E-49	ISS
UniRef100_UPI000233A68F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A68F related cluster n=1 Tax=unknown RepID=UPI000233A68F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g005400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00710

Limit To All Plant Sequences

>Glyma04g00710.1   sequence type=CDS   gene model=Glyma04g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATTTTCATCGGGCGCCAAGGAGCACTAGTGTGCTTCTGGTTGTTGTCTGTGTTTTTTGTGGTAACAGGATTCAACAATGAAGAGCACAGGACAGTGGAGGTAGTTGGCCTAGGAGAATGCGCAGACTGCAGGCAGAACAATATTAAGAATAACCACGCTTTCTCAGGGTTACGTGTGACGGTAGATTGCAAGTCACGACATGGACACTTCAGAACGAGAGGGGCAGGTGCGCTTGATGAATATGGAAACTTCAAAGTATCACTTCCACAGGACATGGTTGAAGATGGTGAGCTAAAAGAAGATTGCTATGCCCAGTTGCATAGTGCATCTGCTGAACCTTGCCCTTCCCACGGAAACTCCAAAATTGTGACCAGGTCAGTCTCTGAAGACACACACACCCTTGCACCTGCTGCTGGAAAACTCAGATTCTCATCAGCATTGTGCACTTCAGCCTTCTTTTGGCATTTCTTCAAACACCACCCAGAATTCCCTTACCCTCCTAAAGATGACTACTCTCTCCCTCCCCCTGTGCCAGTCTATAAGGAACCTCTTCCTCCAGTGCCAGTGTATAAGAAACCCCCAGCACCATATAAGAAACCTCCTATTAGTACTCCATCTCCAGTTGTGAATAAACCATGCCCCCCAAAGGAAAAAACACCTTCTCCCACTCCCATTTACAAGCCACTTCCACCTCCCACTCCCATTTACAAGCCACTTCCTCCTCCTACTCCCATTTATGAGCCTACTCCTACCGCGCCGTCGCCACCATATTTTAAATACTTTCCTCCTTTCCATTTCAAGAAGCCGTGTCCACCTCTTCCCAAGATGGAACCTCCAAAGTTCTTTTACCAACACCCATGGTTTGGAAACTGGCCTCCCTCTCATTCATAG

Predicted protein sequences of Glyma04g00710

Limit To All Plant Sequences

>Glyma04g00710.1   sequence type=predicted peptide   gene model=Glyma04g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFIGRQGALVCFWLLSVFFVVTGFNNEEHRTVEVVGLGECADCRQNNIKNNHAFSGLRVTVDCKSRHGHFRTRGAGALDEYGNFKVSLPQDMVEDGELKEDCYAQLHSASAEPCPSHGNSKIVTRSVSEDTHTLAPAAGKLRFSSALCTSAFFWHFFKHHPEFPYPPKDDYSLPPPVPVYKEPLPPVPVYKKPPAPYKKPPISTPSPVVNKPCPPKEKTPSPTPIYKPLPPPTPIYKPLPPPTPIYEPTPTAPSPPYFKYFPPFHFKKPCPPLPKMEPPKFFYQHPWFGNWPPSHS*

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