SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g00700

Feature Type:gene_model
Chromosome:Gm04
Start:400288
stop:401095
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600AT Annotation by Michelle Graham. TAIR10: rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173 SoyBaseE_val: 4.00E-110ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF161Panther ROC3 (ROTAMASE CYP 3), PEPTIDYL-PROLYL CIS-TRANS I JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_C6T429UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6T429_SOYBN SoyBaseE_val: 2.00E-120ISS
UniRef100_UPI000189D78DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D78D related cluster n=1 Tax=unknown RepID=UPI000189D78D SoyBaseE_val: 7.00E-123ISS

Expression Patterns of Glyma04g00700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00700
ParalogEvidenceComments
Glyma06g00740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g005300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00700
>Glyma04g00700.1   sequence type=CDS   gene model=Glyma04g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACCCTAAGGTCTACTTCGACATGACCATTGGAGGCCAACCGGCGGGGCGCATAGTGATGGAGCTGTACGCCGACACGACTCCTCGCACCGCTGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAGGGCGTGGGCCGCAGCGGGAAGCCCCTCCACTACAAGGGCTCCACCTTCCACCGCGTGATTCCGAACTTCATGTGCCAGGGCGGAGACTTCACCGCCGGTAACGGGACCGGTGGTGAGTCCATCTACGGGTCCAAGTTTGCGGACGAGAACTTCATAAAGAAGCACACGGGCCCCGGCATTCTTTCGATGGCAAACGCCGGACCTGGCACGAACGGGTCTCAGTTCTTCATCTGCACCGTTAAGACGGAGTGGCTCGACGGGAAGCACGTGGTTTTCGGACAGGTTGTGGAGGGCCTTGACGTCGTGAAGGACATCGAGAAGGTGGGGTCCAGCTCCGGTAAGACCTCCAAACCCGTCGTTGTTGCTGACTCCGGTCAACTCTCCTAG
Predicted protein sequences of Glyma04g00700
>Glyma04g00700.1   sequence type=predicted peptide   gene model=Glyma04g00700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANPKVYFDMTIGGQPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTVKTEWLDGKHVVFGQVVEGLDVVKDIEKVGSSSGKTSKPVVVADSGQLS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo