Glyma04g00690 - SoyBase

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Report for Sequence Feature Glyma04g00690

Feature Type:	gene_model
Chromosome:	Gm04
Start:	394379
stop:	397413
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21120	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF803) \| chr2:9052103-9054266 REVERSE LENGTH=328	SoyBase	E_val: 3.00E-171	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009625	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to insect	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG2922	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12570	Panther	UNCHARACTERIZED	JGI		ISS
PF05653	PFAM	Protein of unknown function (DUF803)	JGI		ISS
UniRef100_B9SQJ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative n=1 Tax=Ricinus communis RepID=B9SQJ1_RICCO	SoyBase	E_val: 2.00E-176	ISS
UniRef100_UPI000233A68E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A68E related cluster n=1 Tax=unknown RepID=UPI000233A68E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00690

Paralog	Evidence	Comments
Glyma06g00730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g005200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00690

Limit To All Plant Sequences

>Glyma04g00690.1   sequence type=CDS   gene model=Glyma04g00690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTGCAGAGAACTCAAAGGGTTTGGTTCTTGCTGTGGCATCGGGTGTGTTCATAGGAGCAAGCTTCGTCCTCAAAAAGAAGGGTCTTAAGCAGGCTGCCACCCACGGCACTCGCGCAGGAGTTGGCGGCTATTCTTATCTACTCCAGCCACTTTGGTGGGCTGGCATGCTTACAATGCTTATTGGGGAGGTTGCAAATTTTGTCGCTTATATATATGCTCCTGCACTTCTCGTTACTCCCCTTGGTGCACTAAGTATTATTGTCAGTGCTGTTTTGGCTCACTTCTTGCTCAAGGAAAAGCTTCAGAAGATGGGCATTTTGGGATGTGTCTTCTGCATTGTGGGTTCAGTTCTCATTGTCATCCATGCACCTCAAGAGCATGCTTTAAATTCTGTCCAAGAAATATGGGATCTCGCCACTCAACCGTTATTTCTAGTTTATGTGGCGGCGGCAGTTTCGGTAGTTTTAGCCTTGATTTTGCATTTTGAACCTCGCTACGGACAGACAAATATGCTGGTTTACTTGGGAATTTGCTCGTTAATTGGCTCACTTTTGGTTATGAGCACAAAAGCCATAGGGATCGCAATCAAGCTTACATTGGAGGGAACAAGTCAATTAACATATCCTCAAACTTGGTTTTTTCTTACCGTGACTGTCATATGTATCATTACACAGTTGAATTACCTGAACAAGGCACTGGATACATTTAACACCGCAATTGTCTCTCCCGTATATTATGTCATGTTCACAACTCTGACCATTATTGCTAGTGTGATAATGTTTAAGGATTGGTCTGAGCAGAGTGCAGGTAGCATAGCCTCTGAGATATGTGGATTTGTCATTGTTCTTTCAGGAACAATCTTATTGCATGCGACAAGAGAACAAGAACAATCCAACAAACAAGGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGCGCATTGAGGATGGACACCTGAACCTTTTACATGGTTCAGATTATGTTGAAAAGTGA

Predicted protein sequences of Glyma04g00690

Limit To All Plant Sequences

>Glyma04g00690.1   sequence type=predicted peptide   gene model=Glyma04g00690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIAENSKGLVLAVASGVFIGASFVLKKKGLKQAATHGTRAGVGGYSYLLQPLWWAGMLTMLIGEVANFVAYIYAPALLVTPLGALSIIVSAVLAHFLLKEKLQKMGILGCVFCIVGSVLIVIHAPQEHALNSVQEIWDLATQPLFLVYVAAAVSVVLALILHFEPRYGQTNMLVYLGICSLIGSLLVMSTKAIGIAIKLTLEGTSQLTYPQTWFFLTVTVICIITQLNYLNKALDTFNTAIVSPVYYVMFTTLTIIASVIMFKDWSEQSAGSIASEICGFVIVLSGTILLHATREQEQSNKQGSLTWYIGEDLVKRIEDGHLNLLHGSDYVEK*

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