Report for Sequence Feature Glyma04g00670
Feature Type: gene_model
Chromosome: Gm04
Start: 384553
stop: 386457
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g00670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34940 AT
Annotation by Michelle Graham. TAIR10: armadillo repeat only 1 | chr4:16639760-16641754 FORWARD LENGTH=664
SoyBase E_val: 0 ISS
GO:0009827 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0030036 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization
SoyBase N/A ISS
GO:0030048 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin filament-based movement
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0090404 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: pollen tube tip
SoyBase N/A ISS
PTHR23315 Panther
BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING
JGI ISS
PTHR23315:SF34 Panther
ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
JGI ISS
PF00514 PFAM
Armadillo/beta-catenin-like repeat
JGI ISS
UniRef100_I1JSF4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JSF4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SW41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Armadillo repeat only 1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SW41_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g00670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g00670
Paralog Evidence Comments
Glyma06g00700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g00670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g005000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g00670
Coding sequences of Glyma04g00670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00670.1 sequence type=CDS gene model=Glyma04g00670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAAATGGCGGACCAGGTTTCGAAGCTGGCTGAGGAGGCCCAGAATTTCCGACAGGAATGTCTGGAGCTGAAATCCAAATCGGAGAAGCTGGCGGGCCTCCTCCGCCAGGCCGCCAGGAACAGCAACGATCTCTACGAGCGTCCCACGCGCCGCATCATCGACGACACCGAACAAGTCCTCGACAAGGCCCTGGCGCTCGTTACCAAATGCCGCGCCAACAGCCTCATCAAGAAGCTCTTCACCATCATCCCCGCCACTGCCTTCCGCAAGACCTCCATGCAGCTCGAGAATTCCGTCGGCGACGTCCAGTGGCTCCTCCGGGTCTCCGCCTCCGCCGACGAGCGCGACGACGAGTACCTCGGCCTCCCTCCCATCGCCGCCAACGAGCCCATCCTCTGCCTCATTTGGGAGCAGGTCGCTATTCTTCTCTCCGGCGCTTCCTTGGACGAACGTTCCGACGCTGCCGCCTCGCTCGTCTCTCTCGCTCGCGACAACGACCGTTACGGGAAGCTCATCATCGAAGAAGGCGGCGTCCCCCCTCTGCTTAAGCTCCTCAAGGAAGGAAGAATGGACGGTCAGGAAAACGCCGCCAGAGCCATCGGCTTGCTCGGGAAAGATCCTGAAAGCGTGGAGCACATTGTCAACTCCGGTGTCTGTTCCGTGTTTGCCAAGGTCCTCAAAGAAGGCCACATGAAGGTTCAAACGGTTGTTGCCTGGGCTATCTCTGAACTCGCCGCGAATCACCCGAAATGCCAGGATCATTTTTCGCAGAACAACGCCATACGCTTGCTGGTTAGCCATCTGGCGTTTGAGACAATTCAAGAGCATAGCAAGTACGCCATTGCGAACAAACACAAATCCATTCACTCGGTTCTAATGGCGAGTAATACAACCAGCGCGCAGGAAGAGGATGATGATAAGCAGGTTTCTCACCCCATGTCGGGTCAGTCATCCACTCTAATGCACAACGTGGTTTCCAACACAATGGCCATAAAGAGCGCCATGGAGGAGGATGACAAAGCCAACACCAAGAAACAACAACAGCAACAGAGTGGGAATGGTTCGCACTTGGCAATTGCTGGGAAGAGTATTAAGGGGAGGGAATATGAAGACGCGGGGACCAAGGCACAGATGAAGGCCATGGCAGCCAGAGCCTTATGGCAACTCTCGAGGGGAAACTTGACCGTGTGTCGGAGCATAACAGAGTCAAGGGCTCTATTGTGTTTCGCGGTTCTTTTGGAAAAAGGACCAGACGATGTGCAATCGTATTCGGCAATGGCGTTGATGGAAATCACTGCAGTGTCGGAGCAACATTCGGAGCTGAGGCGCTCTGCTTTCAAACCAACTTCCCCTGCTGCCAAGGCTGTGGTGGAGCAGCTCCTTAAAGTAATCGAAAAAGAACAAGCGGAACTTCTCATAGCTTGCGTCAGATCCGTGGGAAATTTGGCGAGGACGTTCAGAGCCACCGAAACAAGACTCATAGGGCCGTTGGTGAGGCTTCTGGACGAAAGAGAGGCGCAGGTTAGCATGGAAGCGGCCATTGCGCTCAACAAATTTGCTTGTACGGACAACTACCTTCATGAGAATCACTGCAACGCCATCATAGAGGCAGGGGGCGCCAAGCACTTGATTCAACTCGTTTACTTTGGGGAGCAAATGGTTCAGATTTCTTCCGTTACTCTGCTTTGTTACATAGCGCTGCACGTCCCCAAAAGCGAGACACTGGCGCAAGAAGAGGTGCTCATTGTTCTCGAGTGGTGCACCAAGCAGCCACATCTCATCGACCAACCCTCCATCCAACCACTCTTACCAGAAGCCAAGAGCAGGCTCGAACTCTATCAATCCAGAGGAAGAGGATTCCGCTGA
Predicted protein sequences of Glyma04g00670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g00670.1 sequence type=predicted peptide gene model=Glyma04g00670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSIVKEILASPIQMADQVSKLAEEAQNFRQECLELKSKSEKLAGLLRQAARNSNDLYERPTRRIIDDTEQVLDKALALVTKCRANSLIKKLFTIIPATAFRKTSMQLENSVGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQVAILLSGASLDERSDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLLKEGRMDGQENAARAIGLLGKDPESVEHIVNSGVCSVFAKVLKEGHMKVQTVVAWAISELAANHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIANKHKSIHSVLMASNTTSAQEEDDDKQVSHPMSGQSSTLMHNVVSNTMAIKSAMEEDDKANTKKQQQQQSGNGSHLAIAGKSIKGREYEDAGTKAQMKAMAARALWQLSRGNLTVCRSITESRALLCFAVLLEKGPDDVQSYSAMALMEITAVSEQHSELRRSAFKPTSPAAKAVVEQLLKVIEKEQAELLIACVRSVGNLARTFRATETRLIGPLVRLLDEREAQVSMEAAIALNKFACTDNYLHENHCNAIIEAGGAKHLIQLVYFGEQMVQISSVTLLCYIALHVPKSETLAQEEVLIVLEWCTKQPHLIDQPSIQPLLPEAKSRLELYQSRGRGFR*