Glyma04g00600 - SoyBase

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Report for Sequence Feature Glyma04g00600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	346076
stop:	349178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34950	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr4:16642544-16644759 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR21576	Panther	UNCHARACTERIZED NODULIN-LIKE PROTEIN	JGI		ISS
PTHR21576:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06813	PFAM	Nodulin-like	JGI		ISS
UniRef100_D7MDH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MDH3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1JSE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00600

Paralog	Evidence	Comments
Glyma06g00671	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g004500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00600

Limit To All Plant Sequences

>Glyma04g00600.2   sequence type=transcript   gene model=Glyma04g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAGGAAGTGGTGCATGTTTGGTAGTTTAATGGTGTTACTGTCATGTTTAATAGGCTAAAATAATTAGAGCAAAATAATAGTGACGTTTACAACACATGTAGGCAATAGCTATACTTTTAGGTTAAATGAGAGAAAGACAAATTCAAATGTTAACATATTTTCTAATATATTTAAGGCTAAAAGTGTTTAAATGTACTCCACAGGGTGTTGCCAGCATTCCTGATAAGGTTATATAGTAGTACTATTTGTGTCTCTCTTATAATTTTTTTTTTTAAAAAGAAAACCTCAACTTGTGCAAGTAGTAAATGTGCAGACGTCAAGGCTTTACATGATGACAAATGTTACTTAGCATGGAAAAAATAGAATCCTATGGTAAGAGAAAACTGGTAAAACGTGGCTTTCAAGTATGGACATCTATGCAAAAGGGTGCAGTGAGTAGAGCAATATAAGAAGGGAATGATGGGTGGTTAAATCACTGAAATTGTGATCCTAATCCTAATAGAAGAAAAATGATGGGCATTGAATCGACGGGGAGTAAATGGCTTGGGTTGGTGGCGGCGGTGTGGATACAAGCAATCTCCGGCAACAACTACACTTTCTCGAATTACTCGGACGCTCTGAAATCCCTCATGAGCCTAACCCAAATCGAGCTCAACAATCTGTCCGTGGCCAAGGATGTTGGCAAGGCTTTTGGGCTTCTGGCTGGGCTGGCCTCAGACAAATTCCCGACTTGGGCCATTCTCCTCATTGGGTCCCTCCAAGGCCTTATCGGCTATGGCGTCCAGTGGCTCGTCGTCAGCCAGAGAATCCAACCCCTCCCATACTGGCAGATGTGCGTATTCCTCTGCATTGGTGGCAACAGCACTACCTGGATGAACACCGCCGTTCTAGTCACATGCATCCGCAACTTCCGCCGCAACAGAGGCCCCGTTTCCGGCATTCTCAAAGGCTTTGTCGGTTTGAGCACCGCCATATTCACCGACCTCTGTTCCGCTCTCTTCGCCGACGACCCTGCTTCCTTTCTCCTCATGCTCGCCCTCATCCCTTTCGCCGTTTGCCTCTCCGGAATGTTTTTCCTCCGTGAGATTCCTCCCGCCGCCACCAACGACCAGGAAGAGTCTACTTATTTCGCGGTTTTCAACGCGGTTGCCGTGGTCGTCGCCGTTTACCTCTTGGCTTTCGGGTTCGTGCCGAACCCTAGCGCTCTGGTGTCTCGGGCATTCGCCGTGGTTTTGCTACTTCTGTTGGTGGCGCCGATGGGAATCCCGGTCCACTCTTACTTGAAGGCACGAAGGCAGGACGAGCGGTTCAAACCGAATTTGGAGGAGCGGGTTGACGAACCGTTGATTCGCGGAAAAGAGAAGGGGAGTGAAAGTGAGGTGGAGAGAGGGAATGTATTAGCGGAAGAGGCGGCGGCGGAGGGAATGAGTGGACCGGCGGTGGGGGAGGAGCACACGATATGGGAGGCTCTGAAAACGGTGGATTTTTGGATTTTGTTTGTTTCGTTTCTCTGTGGGGTTGGAACGGGTTTGGCGGTTATGAATAATATGGGTCAAATCGGTTTGGCGCTGGGTTATTCGGATGTGTCTCTCTTTGTATCCTTGACTAGTATTTGGGGCTTCTTCGGTCGGATCGTCTCGGGTTCGGTTTCGGAGCACTTCATCAAGTAAGTCCCCTTTCTTCTCCCGTGTGAAAGGAATTTATTTATATTCAACAAAATAAATAAAATGCCTTCATTCTTCAACCTTTACCTTTACCATGTTTTACGTCACTTGAGATTGACAAGACTCGTTTTGTTTTTGTTTTTCGTCTCTGATCGTTATCTCACCTATGTTGACTTTTATAGTTTGCAGTCCCAAGGAGAAATTTCTTGGAATTTGCCTTCGTTTTTTGTTTGGAGGAATATCTTTTGCTTCTATTTTTATTCTGACCTTACTTCCGGTGGAAAGTACTAGGTAGACCCAGGCGTGTTTCCAGCTATCGCAATTGACGTCCGATTCTGATTTAAAAATTGTTAGGAGGAATGAAAATTTCTCTTTTTTAACCATAGCTGCTTAATTTCTAAAATGAGAATTAGATATCCTTCAACGGTTCAACCATCATGGGATGGTCCGGAAAGCTGCAACTCCTAGACCACTTTGGAATGCAGCCTCTCAAATTCTGATGGCGGTGGGATACATACTCCTGGCAATGGCTATGCCAGGTTCCCTTTACATAGGGTCCGTTGTGGTTGGCATATGCTACGGGGTGAGGCTTGCCATTACTGTGCCAACTGCCTCGGAGTTATTCGGCCTCAAATATTATGGTCTTATATACAACATTCTCATTCTTAACCTTCCCCTTGGCTCTTTCCTCTTTTCTGGTCTTCTTGCTGGCATTCTGTATGATATGGAGGCGACTACCACCGTAGGAGGAGGCAACACTTGTATTGGAGCTCATTGCTACAGACTAGTATTCATCATCATGGCTGTAGCTTGTGTTGTTGGCTTCTTCTTAGACATTTTATTGTCATTCAGAACTAAGAAGGTTTACAACAAGATCTCCTCCAGCAAAAACTCCAACAAAAACTCTCTGAATTCAAGTAGGCGATGATCCAAAATGGCCCATATAAAGAGGGTATGACACTTGCGTTGACCAGCATTTTGCACAATGGTATCCTAATTTCCATTGGTATGGTATGGTTATCACTAACCTTTTTCCTTTTGGTAATAAAGGCTGGCTAATTTGTTTGTACATCCATTTTGAGTGCTCTGTAGCAATAGTTGTCAAAATGTTATAGTAGCAATTTGTTGAAGAAAATGTTGTCAAAGATTTTCCATGGATGGAAATATTTTGCAATTTCTTCTGTGTTGATTTATTGTTCTGCTATTTTAGCCAGGTGTCAAAAGTATTGCATAGACTTTACTCAAATTTCATCGCAAATATTTACTTGTTTTTATAACTTTTTTCCCTTTGGAAAGTTATTTGACGAG

Coding sequences of Glyma04g00600

Limit To All Plant Sequences

>Glyma04g00600.1   sequence type=CDS   gene model=Glyma04g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGCATTGAATCGACGGGGAGTAAATGGCTTGGGTTGGTGGCGGCGGTGTGGATACAAGCAATCTCCGGCAACAACTACACTTTCTCGAATTACTCGGACGCTCTGAAATCCCTCATGAGCCTAACCCAAATCGAGCTCAACAATCTGTCCGTGGCCAAGGATGTTGGCAAGGCTTTTGGGCTTCTGGCTGGGCTGGCCTCAGACAAATTCCCGACTTGGGCCATTCTCCTCATTGGGTCCCTCCAAGGCCTTATCGGCTATGGCGTCCAGTGGCTCGTCGTCAGCCAGAGAATCCAACCCCTCCCATACTGGCAGATGTGCGTATTCCTCTGCATTGGTGGCAACAGCACTACCTGGATGAACACCGCCGTTCTAGTCACATGCATCCGCAACTTCCGCCGCAACAGAGGCCCCGTTTCCGGCATTCTCAAAGGCTTTGTCGGTTTGAGCACCGCCATATTCACCGACCTCTGTTCCGCTCTCTTCGCCGACGACCCTGCTTCCTTTCTCCTCATGCTCGCCCTCATCCCTTTCGCCGTTTGCCTCTCCGGAATGTTTTTCCTCCGTGAGATTCCTCCCGCCGCCACCAACGACCAGGAAGAGTCTACTTATTTCGCGGTTTTCAACGCGGTTGCCGTGGTCGTCGCCGTTTACCTCTTGGCTTTCGGGTTCGTGCCGAACCCTAGCGCTCTGGTGTCTCGGGCATTCGCCGTGGTTTTGCTACTTCTGTTGGTGGCGCCGATGGGAATCCCGGTCCACTCTTACTTGAAGGCACGAAGGCAGGACGAGCGGTTCAAACCGAATTTGGAGGAGCGGGTTGACGAACCGTTGATTCGCGGAAAAGAGAAGGGGAGTGAAAGTGAGGTGGAGAGAGGGAATGTATTAGCGGAAGAGGCGGCGGCGGAGGGAATGAGTGGACCGGCGGTGGGGGAGGAGCACACGATATGGGAGGCTCTGAAAACGGTGGATTTTTGGATTTTGTTTGTTTCGTTTCTCTGTGGGGTTGGAACGGGTTTGGCGGTTATGAATAATATGGGTCAAATCGGTTTGGCGCTGGGTTATTCGGATGTGTCTCTCTTTGTATCCTTGACTAGTATTTGGGGCTTCTTCGGTCGGATCGTCTCGGGTTCGGTTTCGGAGCACTTCATCAAGAAAGCTGCAACTCCTAGACCACTTTGGAATGCAGCCTCTCAAATTCTGATGGCGGTGGGATACATACTCCTGGCAATGGCTATGCCAGGTTCCCTTTACATAGGGTCCGTTGTGGTTGGCATATGCTACGGGGTGAGGCTTGCCATTACTGTGCCAACTGCCTCGGAGTTATTCGGCCTCAAATATTATGGTCTTATATACAACATTCTCATTCTTAACCTTCCCCTTGGCTCTTTCCTCTTTTCTGGTCTTCTTGCTGGCATTCTGTATGATATGGAGGCGACTACCACCGTAGGAGGAGGCAACACTTGTATTGGAGCTCATTGCTACAGACTAGTATTCATCATCATGGCTGTAGCTTGTGTTGTTGGCTTCTTCTTAGACATTTTATTGTCATTCAGAACTAAGAAGGTTTACAACAAGATCTCCTCCAGCAAAAACTCCAACAAAAACTCTCTGAATTCAAGTAGGCGATGA

>Glyma04g00600.2   sequence type=CDS   gene model=Glyma04g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGCATTGAATCGACGGGGAGTAAATGGCTTGGGTTGGTGGCGGCGGTGTGGATACAAGCAATCTCCGGCAACAACTACACTTTCTCGAATTACTCGGACGCTCTGAAATCCCTCATGAGCCTAACCCAAATCGAGCTCAACAATCTGTCCGTGGCCAAGGATGTTGGCAAGGCTTTTGGGCTTCTGGCTGGGCTGGCCTCAGACAAATTCCCGACTTGGGCCATTCTCCTCATTGGGTCCCTCCAAGGCCTTATCGGCTATGGCGTCCAGTGGCTCGTCGTCAGCCAGAGAATCCAACCCCTCCCATACTGGCAGATGTGCGTATTCCTCTGCATTGGTGGCAACAGCACTACCTGGATGAACACCGCCGTTCTAGTCACATGCATCCGCAACTTCCGCCGCAACAGAGGCCCCGTTTCCGGCATTCTCAAAGGCTTTGTCGGTTTGAGCACCGCCATATTCACCGACCTCTGTTCCGCTCTCTTCGCCGACGACCCTGCTTCCTTTCTCCTCATGCTCGCCCTCATCCCTTTCGCCGTTTGCCTCTCCGGAATGTTTTTCCTCCGTGAGATTCCTCCCGCCGCCACCAACGACCAGGAAGAGTCTACTTATTTCGCGGTTTTCAACGCGGTTGCCGTGGTCGTCGCCGTTTACCTCTTGGCTTTCGGGTTCGTGCCGAACCCTAGCGCTCTGGTGTCTCGGGCATTCGCCGTGGTTTTGCTACTTCTGTTGGTGGCGCCGATGGGAATCCCGGTCCACTCTTACTTGAAGGCACGAAGGCAGGACGAGCGGTTCAAACCGAATTTGGAGGAGCGGGTTGACGAACCGTTGATTCGCGGAAAAGAGAAGGGGAGTGAAAGTGAGGTGGAGAGAGGGAATGTATTAGCGGAAGAGGCGGCGGCGGAGGGAATGAGTGGACCGGCGGTGGGGGAGGAGCACACGATATGGGAGGCTCTGAAAACGGTGGATTTTTGGATTTTGTTTGTTTCGTTTCTCTGTGGGGTTGGAACGGGTTTGGCGGTTATGAATAATATGGGTCAAATCGGTTTGGCGCTGGGTTATTCGGATGTGTCTCTCTTTGTATCCTTGACTAGTATTTGGGGCTTCTTCGGTCGGATCGTCTCGGGTTCGGTTTCGGAGCACTTCATCAAGTAA

Predicted protein sequences of Glyma04g00600

Limit To All Plant Sequences

>Glyma04g00600.1   sequence type=predicted peptide   gene model=Glyma04g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGIESTGSKWLGLVAAVWIQAISGNNYTFSNYSDALKSLMSLTQIELNNLSVAKDVGKAFGLLAGLASDKFPTWAILLIGSLQGLIGYGVQWLVVSQRIQPLPYWQMCVFLCIGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGFVGLSTAIFTDLCSALFADDPASFLLMLALIPFAVCLSGMFFLREIPPAATNDQEESTYFAVFNAVAVVVAVYLLAFGFVPNPSALVSRAFAVVLLLLLVAPMGIPVHSYLKARRQDERFKPNLEERVDEPLIRGKEKGSESEVERGNVLAEEAAAEGMSGPAVGEEHTIWEALKTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYSDVSLFVSLTSIWGFFGRIVSGSVSEHFIKKAATPRPLWNAASQILMAVGYILLAMAMPGSLYIGSVVVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTVGGGNTCIGAHCYRLVFIIMAVACVVGFFLDILLSFRTKKVYNKISSSKNSNKNSLNSSRR*

>Glyma04g00600.2   sequence type=predicted peptide   gene model=Glyma04g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGIESTGSKWLGLVAAVWIQAISGNNYTFSNYSDALKSLMSLTQIELNNLSVAKDVGKAFGLLAGLASDKFPTWAILLIGSLQGLIGYGVQWLVVSQRIQPLPYWQMCVFLCIGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGFVGLSTAIFTDLCSALFADDPASFLLMLALIPFAVCLSGMFFLREIPPAATNDQEESTYFAVFNAVAVVVAVYLLAFGFVPNPSALVSRAFAVVLLLLLVAPMGIPVHSYLKARRQDERFKPNLEERVDEPLIRGKEKGSESEVERGNVLAEEAAAEGMSGPAVGEEHTIWEALKTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYSDVSLFVSLTSIWGFFGRIVSGSVSEHFIK*

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