Report for Sequence Feature Glyma04g00580
Feature Type: gene_model
Chromosome: Gm04
Start: 335041
stop: 339768
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g00580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34960 AT
Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:16648865-16650646 FORWARD LENGTH=224
SoyBase E_val: 2.00E-118 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0003755 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity
SoyBase N/A ISS
KOG0880
KOG
Peptidyl-prolyl cis-trans isomerase
JGI ISS
PTHR11071 Panther
CYCLOPHILIN
JGI ISS
PTHR11071:SF57 Panther
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN)
JGI ISS
PF00160 PFAM
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
JGI ISS
UniRef100_I1JSE7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSE7_SOYBN
SoyBase E_val: 2.00E-167 ISS
UniRef100_I3S543 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Medicago truncatula RepID=I3S543_MEDTR
SoyBase E_val: 1.00E-128 ISS
Expression Patterns of Glyma04g00580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g00580
Paralog Evidence Comments
Glyma06g00650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g00580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g004300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g00580
Coding sequences of Glyma04g00580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00580.1 sequence type=CDS gene model=Glyma04g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGACTCAGCATTGTGGGTATCGAAGCAATGCATAGAGCGATCTCGTTTCTCATTCAACCGCGATGCCTCCTTCTCATAGTTGTTCTCTCAATTTTCTTGATTCTCGCATTATCTGGTTCCAAACGAGTTGAAGAGAAAGAAGAAGAACTTGAAATTACAGATAGAGTATTCTTGGATGTTGATATTGATGGACAGCGTCTAGGTAGGATTCTCATTGGATTATATGGCAAAGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGAAAGAATGCCAGTGGTGTAAAACTTCATTACAAAGGAATACCATTTCATAGGATAATATCAGGTTTCATGATTCAGGGCGGTGACATTGTTCATCATGATGGTAGAGGATATGAATCAATTTATGGTGGCACTTTTCCTGATGAGAATTTCAAGATAAACCATTCTAATGCTGGTGTAGTCTCTATGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTTATTACAACAGTGAAGACCGCTTGGTTAGATGGAGAACATGTTGTTTTTGGCAAGGTTGTCCAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCCAGAAAGAAGGTAGTTATTGCAGACTCTGGAGAGATACCCAAGAGCCAGTGGGATATGGAAAGATGA
Predicted protein sequences of Glyma04g00580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g00580.1 sequence type=predicted peptide gene model=Glyma04g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLSIVGIEAMHRAISFLIQPRCLLLIVVLSIFLILALSGSKRVEEKEEELEITDRVFLDVDIDGQRLGRILIGLYGKVVPKTVENFRALCTGEKGKNASGVKLHYKGIPFHRIISGFMIQGGDIVHHDGRGYESIYGGTFPDENFKINHSNAGVVSMVNSGPDSNGSQFFITTVKTAWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGEIPKSQWDMER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
