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Report for Sequence Feature Glyma04g00560

Feature Type:gene_model
Chromosome:Gm04
Start:322824
stop:325952
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34980AT Annotation by Michelle Graham. TAIR10: subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764 SoyBaseE_val: 0ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009069GO-bp Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0043086GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048196GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant extracellular matrix SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0008236GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
PTHR10795Panther SUBTILISIN/KEXIN-RELATED SERINE PROTEASE JGI ISS
PTHR10795:SF17Panther gb def: possible protease [sinorhizobium meliloti] JGI ISS
PF00082PFAM Subtilase family JGI ISS
PF02225PFAM PA domain JGI ISS
PF05922PFAM Peptidase inhibitor I9 JGI ISS
UniRef100_B9T6I8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cucumisin, putative n=1 Tax=Ricinus communis RepID=B9T6I8_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233A532UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A532 related cluster n=1 Tax=unknown RepID=UPI000233A532 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g00560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g004200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00560
>Glyma04g00560.1   sequence type=CDS   gene model=Glyma04g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAACATTATGCGGAATGCTGATCCTCCCGCGCTCCTTTCCTGCAACTTGTTGTTGTTGTTTTTCATTATTCTCTTTAGTTTTCTCCCACAAACCATAGCGCTGCAGTATCAAGTTTCGAAAACATTCATCTTCAGAATCGATTCAGAATCGAAGCCGTCAGTTTTCCCCACACACTACCACTGGTACACCTCCGAGTTCGCAGACCCAACCCGCATCCTCCATCTCTACGACACCGTTTTCCACGGCTTCTCCGCAGTTCTCACCCACCAACAAGTCGCTTCTCTCGGCCAGCACCCCTCCGTCCTCGCCGTCTTCGAGGACCGCCGCCGCCACCTTCACACCACTCGCTCCCCTCAGTTTGTTGGCCTCAGAAACCAGCGTGGCCTGTGGTCCGAAACTGACTACGGATCCGACGTTATCATCGGAGTGTTCGACACTGGAATCTGGCCGGAGCGCCGCAGCTTCAGCGACTCCAACTTAGGCCCCATTCCTAAACGCTGGAAAGGGGTTTGCGAAAGCGGCGTGAGATTCTCTCCCAGTAACTGTAACAGGAAATTGATCGGTGCCAGATTCTTCTCTAAAGGCCACGAGGCAAGCGGCACTTCCTTTAACGACACCGTCGAATTCCGTTCGCCTCGAGACGCGGATGGCCACGGAACCCACACGGCGTCAACCGCGGCGGGCCGTTACGTTTTCGAAGCCAGCATGGCCGGCTATGCTTTTGGAGTCGCAAAGGGCGTGGCTCCCAAAGCAAGACTAGCCATGTACAAGTTGTGTTGGAAGAATTCCGGTTGCTTTGACTCTGACATTCTCGCGGCCTTTGACGCCGCCGTGGCCGACGGCGTCGACGTCATTTCTATGTCCATCGGCGGTGGCGACGGCATTTCCTCCCCTTACTATCTTGACCCCATTGCCATCGGGTCTTACGGTGCAGTTTCAAGAGGTGTGTTTGTGTCTTCTTCGGGTGGAAACGACGGGCCCAGTGGCATGTCGGTGACAAACCTCGCTCCGTGGTTGACAACCGTCGGAGCAGGCACCATTGATCGTGATTTTCCGGCGGAGGTTATATTGGGAAACGGACGAAGACTCTCCGGGGTATCTCTGTACTCCGGAGAGCCGTTGAAGGGGAAAATGTATCCCTTAATATACCCCGGAAAATCAGGGGTTCTGACGGATTCTCTGTGCATGGAAAACTCATTAGACCCCGAACTGGTAAAAGGGAAGATAGTGGTTTGCGACAGAGGAAGTAGTGCGAGGGTTGCGAAGGGGTTGGTGGTGAAGAAAGCCGGTGGAGTGGGAATGATTCTGGCTAACGGAATATCCAACGGAGAAGGTCTTGTTGGGGACGCTCATCTTCTTCCCGCGTGTGCGCTTGGTGCTAACTTTGGAGACGAAATCAAAGAATACATTAATTTCTCCGCGAACCCCACGGCTACAATTGATTTCAAAGGCACCGTGGTGGGAATCAGACCGGCACCCGTTGTGGCGTCGTTTTCGGCGAGGGGGCCCAACGGGTTGAGTTTGGAAATACTTAAACCGGATTTGACGGCACCGGGGGTCAACATTCTGGCGGCCTGGACCGGTGGGGTTGGGCCTTCTGGGTTGGACTCCGACACCAGAAGAACCGAATTCAACATATTGTCGGGCACCTCAATGGCGTGTCCTCACGTGAGTGGCGCAGCGGCCTTGTTGAAGTCGGCGCACCCTGATTGGAGCCCCGCGGCCATAAGGTCTGCCATGATGACAACCGCCACGGTTTTTGACAACACCAACGCTCTGATGATTGATCAAGCCACCGGGAATGCTTCCACGCCCTATGATTTTGGCGCTGGCCATCTCAACCTCGCTCTCGCAATGGACCCTGGCTTGGTTTACAACATTACCCCCCATGATTATGTCACCTTCCTCTGTGCTATTGGTTACGGGCCCAGGTTGATTCAGGTCATTACCGGATCGCCGCCCAATTGTCCTCGGAGGAGGCCCTTGCCGGAGAATCTCAATTACCCGTCGTTTGTGGCGGTCTTACCGGTGTCGTCGTCGTTGTTGAGCAAGACGTTCTTCAGGACGGTGACGAATGTGGGCCCGCCGAGTGCGGTGTATCGGGTGAGGGTGGAGACGCAGGCGGAGGGGGTGGCGGTGACGGTGAGGCCGTCGCAGCTTGTATTTTCGGAAGCAGTTAAGAAGCGGAGTTTTGTGGTGACTGTGACGGCGGATGGACGGAATCTGGAGCTGGGTCAGGCTGGGGCAGTGTTCGGGTCCCTTTCGTGGACGGATGGGAAGCACGTGGTTCGGAGCCCCATGGTGGTTACTCAAGCTCAACCGCTTTAA
Predicted protein sequences of Glyma04g00560
>Glyma04g00560.1   sequence type=predicted peptide   gene model=Glyma04g00560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANIMRNADPPALLSCNLLLLFFIILFSFLPQTIALQYQVSKTFIFRIDSESKPSVFPTHYHWYTSEFADPTRILHLYDTVFHGFSAVLTHQQVASLGQHPSVLAVFEDRRRHLHTTRSPQFVGLRNQRGLWSETDYGSDVIIGVFDTGIWPERRSFSDSNLGPIPKRWKGVCESGVRFSPSNCNRKLIGARFFSKGHEASGTSFNDTVEFRSPRDADGHGTHTASTAAGRYVFEASMAGYAFGVAKGVAPKARLAMYKLCWKNSGCFDSDILAAFDAAVADGVDVISMSIGGGDGISSPYYLDPIAIGSYGAVSRGVFVSSSGGNDGPSGMSVTNLAPWLTTVGAGTIDRDFPAEVILGNGRRLSGVSLYSGEPLKGKMYPLIYPGKSGVLTDSLCMENSLDPELVKGKIVVCDRGSSARVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGANFGDEIKEYINFSANPTATIDFKGTVVGIRPAPVVASFSARGPNGLSLEILKPDLTAPGVNILAAWTGGVGPSGLDSDTRRTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTATVFDNTNALMIDQATGNASTPYDFGAGHLNLALAMDPGLVYNITPHDYVTFLCAIGYGPRLIQVITGSPPNCPRRRPLPENLNYPSFVAVLPVSSSLLSKTFFRTVTNVGPPSAVYRVRVETQAEGVAVTVRPSQLVFSEAVKKRSFVVTVTADGRNLELGQAGAVFGSLSWTDGKHVVRSPMVVTQAQPL*






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