SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34980 | AT | Annotation by Michelle Graham. TAIR10: subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764 | SoyBase | E_val: 0 | ISS |
| GO:0000096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0043086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048196 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant extracellular matrix | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PTHR10795 | Panther | SUBTILISIN/KEXIN-RELATED SERINE PROTEASE | JGI | ISS | |
| PTHR10795:SF17 | Panther | gb def: possible protease [sinorhizobium meliloti] | JGI | ISS | |
| PF00082 | PFAM | Subtilase family | JGI | ISS | |
| PF02225 | PFAM | PA domain | JGI | ISS | |
| PF05922 | PFAM | Peptidase inhibitor I9 | JGI | ISS | |
| UniRef100_B9T6I8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cucumisin, putative n=1 Tax=Ricinus communis RepID=B9T6I8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A532 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A532 related cluster n=1 Tax=unknown RepID=UPI000233A532 | SoyBase | E_val: 0 | ISS |
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Glyma04g00560 not represented in the dataset |
Glyma04g00560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g004200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g00560.1 sequence type=CDS gene model=Glyma04g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAACATTATGCGGAATGCTGATCCTCCCGCGCTCCTTTCCTGCAACTTGTTGTTGTTGTTTTTCATTATTCTCTTTAGTTTTCTCCCACAAACCATAGCGCTGCAGTATCAAGTTTCGAAAACATTCATCTTCAGAATCGATTCAGAATCGAAGCCGTCAGTTTTCCCCACACACTACCACTGGTACACCTCCGAGTTCGCAGACCCAACCCGCATCCTCCATCTCTACGACACCGTTTTCCACGGCTTCTCCGCAGTTCTCACCCACCAACAAGTCGCTTCTCTCGGCCAGCACCCCTCCGTCCTCGCCGTCTTCGAGGACCGCCGCCGCCACCTTCACACCACTCGCTCCCCTCAGTTTGTTGGCCTCAGAAACCAGCGTGGCCTGTGGTCCGAAACTGACTACGGATCCGACGTTATCATCGGAGTGTTCGACACTGGAATCTGGCCGGAGCGCCGCAGCTTCAGCGACTCCAACTTAGGCCCCATTCCTAAACGCTGGAAAGGGGTTTGCGAAAGCGGCGTGAGATTCTCTCCCAGTAACTGTAACAGGAAATTGATCGGTGCCAGATTCTTCTCTAAAGGCCACGAGGCAAGCGGCACTTCCTTTAACGACACCGTCGAATTCCGTTCGCCTCGAGACGCGGATGGCCACGGAACCCACACGGCGTCAACCGCGGCGGGCCGTTACGTTTTCGAAGCCAGCATGGCCGGCTATGCTTTTGGAGTCGCAAAGGGCGTGGCTCCCAAAGCAAGACTAGCCATGTACAAGTTGTGTTGGAAGAATTCCGGTTGCTTTGACTCTGACATTCTCGCGGCCTTTGACGCCGCCGTGGCCGACGGCGTCGACGTCATTTCTATGTCCATCGGCGGTGGCGACGGCATTTCCTCCCCTTACTATCTTGACCCCATTGCCATCGGGTCTTACGGTGCAGTTTCAAGAGGTGTGTTTGTGTCTTCTTCGGGTGGAAACGACGGGCCCAGTGGCATGTCGGTGACAAACCTCGCTCCGTGGTTGACAACCGTCGGAGCAGGCACCATTGATCGTGATTTTCCGGCGGAGGTTATATTGGGAAACGGACGAAGACTCTCCGGGGTATCTCTGTACTCCGGAGAGCCGTTGAAGGGGAAAATGTATCCCTTAATATACCCCGGAAAATCAGGGGTTCTGACGGATTCTCTGTGCATGGAAAACTCATTAGACCCCGAACTGGTAAAAGGGAAGATAGTGGTTTGCGACAGAGGAAGTAGTGCGAGGGTTGCGAAGGGGTTGGTGGTGAAGAAAGCCGGTGGAGTGGGAATGATTCTGGCTAACGGAATATCCAACGGAGAAGGTCTTGTTGGGGACGCTCATCTTCTTCCCGCGTGTGCGCTTGGTGCTAACTTTGGAGACGAAATCAAAGAATACATTAATTTCTCCGCGAACCCCACGGCTACAATTGATTTCAAAGGCACCGTGGTGGGAATCAGACCGGCACCCGTTGTGGCGTCGTTTTCGGCGAGGGGGCCCAACGGGTTGAGTTTGGAAATACTTAAACCGGATTTGACGGCACCGGGGGTCAACATTCTGGCGGCCTGGACCGGTGGGGTTGGGCCTTCTGGGTTGGACTCCGACACCAGAAGAACCGAATTCAACATATTGTCGGGCACCTCAATGGCGTGTCCTCACGTGAGTGGCGCAGCGGCCTTGTTGAAGTCGGCGCACCCTGATTGGAGCCCCGCGGCCATAAGGTCTGCCATGATGACAACCGCCACGGTTTTTGACAACACCAACGCTCTGATGATTGATCAAGCCACCGGGAATGCTTCCACGCCCTATGATTTTGGCGCTGGCCATCTCAACCTCGCTCTCGCAATGGACCCTGGCTTGGTTTACAACATTACCCCCCATGATTATGTCACCTTCCTCTGTGCTATTGGTTACGGGCCCAGGTTGATTCAGGTCATTACCGGATCGCCGCCCAATTGTCCTCGGAGGAGGCCCTTGCCGGAGAATCTCAATTACCCGTCGTTTGTGGCGGTCTTACCGGTGTCGTCGTCGTTGTTGAGCAAGACGTTCTTCAGGACGGTGACGAATGTGGGCCCGCCGAGTGCGGTGTATCGGGTGAGGGTGGAGACGCAGGCGGAGGGGGTGGCGGTGACGGTGAGGCCGTCGCAGCTTGTATTTTCGGAAGCAGTTAAGAAGCGGAGTTTTGTGGTGACTGTGACGGCGGATGGACGGAATCTGGAGCTGGGTCAGGCTGGGGCAGTGTTCGGGTCCCTTTCGTGGACGGATGGGAAGCACGTGGTTCGGAGCCCCATGGTGGTTACTCAAGCTCAACCGCTTTAA
>Glyma04g00560.1 sequence type=predicted peptide gene model=Glyma04g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANIMRNADPPALLSCNLLLLFFIILFSFLPQTIALQYQVSKTFIFRIDSESKPSVFPTHYHWYTSEFADPTRILHLYDTVFHGFSAVLTHQQVASLGQHPSVLAVFEDRRRHLHTTRSPQFVGLRNQRGLWSETDYGSDVIIGVFDTGIWPERRSFSDSNLGPIPKRWKGVCESGVRFSPSNCNRKLIGARFFSKGHEASGTSFNDTVEFRSPRDADGHGTHTASTAAGRYVFEASMAGYAFGVAKGVAPKARLAMYKLCWKNSGCFDSDILAAFDAAVADGVDVISMSIGGGDGISSPYYLDPIAIGSYGAVSRGVFVSSSGGNDGPSGMSVTNLAPWLTTVGAGTIDRDFPAEVILGNGRRLSGVSLYSGEPLKGKMYPLIYPGKSGVLTDSLCMENSLDPELVKGKIVVCDRGSSARVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGANFGDEIKEYINFSANPTATIDFKGTVVGIRPAPVVASFSARGPNGLSLEILKPDLTAPGVNILAAWTGGVGPSGLDSDTRRTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTATVFDNTNALMIDQATGNASTPYDFGAGHLNLALAMDPGLVYNITPHDYVTFLCAIGYGPRLIQVITGSPPNCPRRRPLPENLNYPSFVAVLPVSSSLLSKTFFRTVTNVGPPSAVYRVRVETQAEGVAVTVRPSQLVFSEAVKKRSFVVTVTADGRNLELGQAGAVFGSLSWTDGKHVVRSPMVVTQAQPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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