Glyma04g00550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g00550

Feature Type:	gene_model
Chromosome:	Gm04
Start:	309327
stop:	310388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34990	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 32 \| chr4:16661370-16662289 REVERSE LENGTH=274	SoyBase	E_val: 2.00E-91	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_E4W696	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor MYB047 n=1 Tax=Glycine max RepID=E4W696_SOYBN	SoyBase	E_val: 4.00E-152	ISS
UniRef100_E4W696	UniRef	Annotation by Michelle Graham. Best UniRef hit: Transcription factor MYB047 n=1 Tax=Glycine max RepID=E4W696_SOYBN	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma04g00550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00550

Paralog	Evidence	Comments
Glyma06g00630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g004100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00550

Limit To All Plant Sequences

>Glyma04g00550.2   sequence type=transcript   gene model=Glyma04g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGTCGCTATCACACAGTCTCATGCACCAATATAATAAAGAAGCGCAACTACCATGCCTATAAAAATGAGGTGCGAGGGCCGGCCACATTGTTGGAGAGAGAGATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAATTGCCGGGTAGAACGGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTGCCACTCACAGGCCTCTCAACGATGACAAGGTATTGGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCGTCAACCTCAATCTGATCAGCATCACTTGAAGCCCGTTGGGAGAAACTCAAACCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAATAGCAAAGATCATTGTAGCTGTGCGCTCAACACTGCCAACGCTGCTTCTGGCCATGATTTCTTGGCCTTGAAAACCAGCGTTTTGGAAATGAAATGAGTCAAATTCATTTTGGAATCTTTCTTCCCTAATTAATTAGTTGTTAATGGATGCAAATGATTGCCTGCCCAATTTCCTCGTGGAGCCCTTTCTATTATTCCTATGTTCATGTACATGTGCGTAAGACTACAAACTTTCTTGTTTATACGATTGGTTCTTTCCAAATAGAATACAACTATATATTTTTGTTATTTCTATAACAAAAGTTCAATTCATCACTTCGATCGATGGTAGAGAGAATTACCACAATCATT

Coding sequences of Glyma04g00550

Limit To All Plant Sequences

>Glyma04g00550.1   sequence type=CDS   gene model=Glyma04g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAGTGGTCTCTAATTGCTGGAAGATTGCCGGGTAGAACGGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTGCCACTCACAGGCCTCTCAACGATGACAAGGTATTGGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCGTCAACCTCAATCTGATCAGCATCACTTGAAGCCCGTTGGGAGAAACTCAAACCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAATAGCAAAGATCATTGTAGCTGTGCGCTCAACACTGCCAACGCTGCTTCTGGCCATGATTTCTTGGCCTTGAAAACCAGCGTTTTGGAAATGAAATGA

>Glyma04g00550.2   sequence type=CDS   gene model=Glyma04g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCATAGCCTCCTTGGCAACAAATTGCCGGGTAGAACGGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTGCCACTCACAGGCCTCTCAACGATGACAAGGTATTGGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCGTCAACCTCAATCTGATCAGCATCACTTGAAGCCCGTTGGGAGAAACTCAAACCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAATAGCAAAGATCATTGTAGCTGTGCGCTCAACACTGCCAACGCTGCTTCTGGCCATGATTTCTTGGCCTTGAAAACCAGCGTTTTGGAAATGAAATGA

Predicted protein sequences of Glyma04g00550

Limit To All Plant Sequences

>Glyma04g00550.1   sequence type=predicted peptide   gene model=Glyma04g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSPCCEKAHTNKGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSLEEDQLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDDKVLERCPDLNLELTISPPRQPQSDQHHLKPVGRNSNLCFACSLGLQNSKDHCSCALNTANAASGHDFLALKTSVLEMK*

>Glyma04g00550.2   sequence type=predicted peptide   gene model=Glyma04g00550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSPCCEKAHTNKGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSLEEDQLIIKLHSLLGNKLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDDKVLERCPDLNLELTISPPRQPQSDQHHLKPVGRNSNLCFACSLGLQNSKDHCSCALNTANAASGHDFLALKTSVLEMK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain