Glyma04g00490 - SoyBase

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Report for Sequence Feature Glyma04g00490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	255786
stop:	257340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35070	AT	Annotation by Michelle Graham. TAIR10: SBP (S-ribonuclease binding protein) family protein \| chr4:16694488-16695387 FORWARD LENGTH=265	SoyBase	E_val: 1.00E-44	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1100	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
UniRef100_G7J8J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Baculoviral IAP repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J8J3_MEDTR	SoyBase	E_val: 5.00E-61	ISS
UniRef100_I1JSD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00490

Paralog	Evidence	Comments
Glyma06g00590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g003600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00490

Limit To All Plant Sequences

>Glyma04g00490.1   sequence type=CDS   gene model=Glyma04g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTGAAGCACAGTTGTATCCCAACAATGCTCCTCCGTTTCCTTTTCACGTGTCAAGGGTAGACAAATCTCCAGCAGCATATAGTCATAGTCACAGGCAACAACAACCAGGTGGCTGGCAGATGAATCAGAACATTCCTCTTGTTCCTCCCAACTTTTCTTGTTTTTCCAATTCCAATTCCAATTCCAATTCCAATGTCCTCCAAAACGCCTTCAATAAGAATGTTGTTCAGCCTTCAGCCTCATATCCTCAATGCTTGGCTATTGAGTTTGATCAACAGAGGGAGATTGATCACCATATCAGATCACATAACGAAAAATTGAGGATTTTGTTGCAAGAGCAAAGGAAACAGCATGTGGCAGAGTTATTGAAGAAGGTGGAATCGAATGCTCTTCATTTGTTGAGACAGAAAGATGAAGAAATAGCGCAGGCAACAAAGAAAAGCACCGAGTTGAAAGAATTTATGACAAGGTTGGAGGTGGAGAACCAATCATGGCGTAAGGTAGCCGAGGAAAACGAGGCTATGGTATTGTCCCTTCACAACACCTTAGAAGATATGAAAGAAAGAGCTCTGTATCGGGTGACAAAAGAGGATGCAGAGTCGTGTTGCGATGAAAACATGAGAAACAGGGCAATGGAAGAAGGAACAGGAGAAAACAGACTGTGCGGTGGTGGTGGCGCTGGTGGGGTAGAAGAGGTTGAGCAAATTAGGAAAAGGACAATGGATTGCAAATGTTGTAATTCTCAAAATTCGTGCTTTATGTTTCTTCCTTGCAGACACCTCTGTTCGTGTAAAACTTGTGAGCCTTTTCTGCAAGTTTGCCCTGTTTGTAGTATGCCTAAAAAGTCTAGCATAGAGACATTAATTGTATAG

Predicted protein sequences of Glyma04g00490

Limit To All Plant Sequences

>Glyma04g00490.1   sequence type=predicted peptide   gene model=Glyma04g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIEAQLYPNNAPPFPFHVSRVDKSPAAYSHSHRQQQPGGWQMNQNIPLVPPNFSCFSNSNSNSNSNVLQNAFNKNVVQPSASYPQCLAIEFDQQREIDHHIRSHNEKLRILLQEQRKQHVAELLKKVESNALHLLRQKDEEIAQATKKSTELKEFMTRLEVENQSWRKVAEENEAMVLSLHNTLEDMKERALYRVTKEDAESCCDENMRNRAMEEGTGENRLCGGGGAGGVEEVEQIRKRTMDCKCCNSQNSCFMFLPCRHLCSCKTCEPFLQVCPVCSMPKKSSIETLIV*

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