Glyma04g00460 - SoyBase

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Report for Sequence Feature Glyma04g00460

Feature Type:	gene_model
Chromosome:	Gm04
Start:	238358
stop:	239853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47140	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:19350970-19352059 REVERSE LENGTH=257	SoyBase	E_val: 5.00E-85	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0725	KOG	Reductases with broad range of substrate specificities	JGI		ISS
PTHR24322	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7KNM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Short-chain alcohol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KNM6_MEDTR	SoyBase	E_val: 2.00E-149	ISS
UniRef100_I1JSD6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSD6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g003300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00460

Limit To All Plant Sequences

>Glyma04g00460.1   sequence type=CDS   gene model=Glyma04g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGATCGATCAGAAAAGCAAACGCTAGAATACAAAGGCAGGGTTGGTGAGGAACGAAGCGGTCTCAGGTTGAAAGCCAAAGTAGCCATAGTCACCGGAGGTGCAAGTGGCATCGGCGAAGCGACGGCGCGTGTGTTCGCGGAGCAAGGCGCGCGTATGGTGGTGCTCGCAGACATCCAAGACGAGCTTGGGAATCAGGTGGCTGCGTCCATTGGAACCCAGCGGTGCACCTACATCCACTGCGACGTGGCAGACGAAGAACAAGTTCAAAACCTCGTCCAATCAACGGTCGACGCTTACGGACAAGTGGACATAATGTTCAGCAACGCTGGGATCCTTAGTCCCTCCCAACAGACGGTGCCCGAACTGGACATGTCCCAACTAGACAGGCTGTTCGCGGTCAACGTACGGGGAATGGCGGCGTGCGTGAAACACGCGGCGCGTGCGATGTTGGAGGGGCGCGTGAGGGGAAGCATAGTGTGCACGGCGAGCGTGGGTGGGAGCCACGGTGGGCCAAATGCGACGGACTACATAATGTCGAAGCACGCGGTGTTGGGGTTGATGCGTTCGGCGAGCGTGCAGCTTGCGGAACACGGGATAAGAGTGAACTGCGTCTCACCCAATGGGTTGGCAACGCCGTTGACTTGTAAACAGCGAGGGATGAGCGAGGAGGAGGGGCAAGAGGTTTACCGGAAATACGCGAGATTGCAAGGAGTGGTGCTCACGCCCAAACACGTGGCAGACGCCGTGTTGTTTCTCGTCTCTGATGACTCCGCCTTTGTCACTGCCCTTGATCTTAGGGTCGACGGTGGCTTTACTTTGCCTAGTATATCAATTTCAAATTCTATACTATTGTAA

Predicted protein sequences of Glyma04g00460

Limit To All Plant Sequences

>Glyma04g00460.1   sequence type=predicted peptide   gene model=Glyma04g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDRSEKQTLEYKGRVGEERSGLRLKAKVAIVTGGASGIGEATARVFAEQGARMVVLADIQDELGNQVAASIGTQRCTYIHCDVADEEQVQNLVQSTVDAYGQVDIMFSNAGILSPSQQTVPELDMSQLDRLFAVNVRGMAACVKHAARAMLEGRVRGSIVCTASVGGSHGGPNATDYIMSKHAVLGLMRSASVQLAEHGIRVNCVSPNGLATPLTCKQRGMSEEEGQEVYRKYARLQGVVLTPKHVADAVLFLVSDDSAFVTALDLRVDGGFTLPSISISNSILL*

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