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Report for Sequence Feature Glyma04g00450

Feature Type:gene_model
Chromosome:Gm04
Start:227969
stop:229479
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35100AT Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0015250GO-mf Annotation by Michelle Graham. GO Molecular Function: water channel activity SoyBaseN/AISS
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI ISS
PTHR19139Panther AQUAPORIN TRANSPORTER JGI ISS
PTHR19139:SF50Panther SUBFAMILY NOT NAMED JGI ISS
PF00230PFAM Major intrinsic protein JGI ISS
UniRef100_I1JSD5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSD5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5DVT5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plasma membrane intrinsic protein 2;5 n=1 Tax=Mimosa pudica RepID=Q5DVT5_MIMPU SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g00450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00450
ParalogEvidenceComments
Glyma06g00550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g003200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00450
>Glyma04g00450.2   sequence type=CDS   gene model=Glyma04g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCACGCTGTTGAACCCTGTCCTTTCCAAAGTTGCCCTTTATTTGTTGATTCCAAATTTGCCCTTGTCTGAACTCTGGCATAAAAAAGCATCAACGCTTGAATTCTCTCGCAGCTCATCGAGAATGTCGAAGGAAGTGAGCCAGCAGAGGAAGGACTACGTAGACCCTCCGCCAGCCCCCCTCATCGACTTGGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTTATCGCCACACTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATTGGCCACAAAAAACAGACCGGACCATGTGACGGCGTTGGCCTTCTCGGCATCGCATGGGCCTTCGGTGGCATGATCTTTGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGTGCCCTGTTCTACATGGTAGCGCAGTGTTTGGGTGCTATCTGCGGTGTCGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCTGGCTACAACAAAGGCAGTGCTCTGGGTGCGGAGATCATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCGGCTACCGACCCCAAGAGAAGCGCTCGTGACTCTCATATCCCCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACTGGTACCGGGATTAACCCAGCAAGGAGCTTCGGTGCTGCTGTTATCTACAACAATGGCAAAGTTTGGGATGACCATTGGATATTCTGGGTTGGACCATTCGTGGGAGCGTTGGCGGCGGCGGCGTACCATCAGTACATCCTGAGAGCAGCGGCTATTAAGGCCTTAGGGTCGTTCAGGAGCAACCCTACCAACTAG
Predicted protein sequences of Glyma04g00450
>Glyma04g00450.2   sequence type=predicted peptide   gene model=Glyma04g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTLLNPVLSKVALYLLIPNLPLSELWHKKASTLEFSRSSSRMSKEVSQQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRALFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN*






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