Report for Sequence Feature Glyma04g00400
Feature Type: gene_model
Chromosome: Gm04
Start: 178821
stop: 183703
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g00400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G07580 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2421177-2422661 REVERSE LEN
SoyBase E_val: 8.00E-17 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6SW96 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW96_SOYBN
SoyBase E_val: 3.00E-112 ISS
Expression Patterns of Glyma04g00400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g00400
Paralog Evidence Comments
Glyma06g00490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g00400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g002700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g00400
Transcripts of Glyma04g00400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00400.3 sequence type=transcript gene model=Glyma04g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCCAAAACTTTGCTTATTCGGACCAACGATTGGAAGTTTCCTTTTGATTAAACTTAAAGATCAAGCGGGCCGGCCCAGACATGCCTTAATTGATTATGGTAAAAGGAAAGGGAAAGAGGATGTGCTTTCTCTCTCTTTGAATTGGCATTGGAATTCAACTCTTCTCTTTCTCTGTCGAAGAACAAGTAGTTTCAGAAAGATGCTAGAGAATCTTCAGGCTCCTCCGTCAACAACGGAATCGGCCCCAGTGGTGAAGCGCTATGCTCCACCCAACCAGAGGAACCGTTCTGCTAACAGGCGCAAATCATCTGGTTGGACAGCTGCAATACAATCCTACAATAATCCCAAAGATTCATCTGAAAAGCCAGTTATGTATTCGAGTGGGACTTCAGTATGGACTGCAGCTACAAGTGCTTCCTCTTCTGTATCTCAACGGGACTTCCTGGGAGAACTTCGTCGCCAAATGCACAGTGCAAATCCCAGTTTCACTACATGATGGCTGACTTGGATTGTTTAATAAAGATTTTGGATCATCGTGGATTTGTCGAATGCTTTAAGAACACTGCGATGCTCAGCTACCTGTTGTTTGTGCCTTTGTGACTTGTTTTGTCAAACTCATTACTAATATATGTATCTTCAAAATCGGACTCAGAATATCAACCACGCTTGTGTATGTGTAAATTGGGGTGTCAGCTCTTCTAGGAGCTTAAATACGTTTTTTTGTCCCTCTAAGTTAGCATGTCTTTTTTTGTCCTTCTCAATTCATTTTTCTAATTTTAGTTCAGGTAAGTTGCTGTTTTTTTTTTTTTTTTTGATCCTTGTAAAATATTTTGTTTATTTTTAGTTTATGTTAGTTTGCATTTTTTCAATTTTAGTTCCGG
Coding sequences of Glyma04g00400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00400.2 sequence type=CDS gene model=Glyma04g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCCAAAACTTTGCTTATTCGGACCAACGATTGGAAGTTTCCTTTTGATTAAACTTAAAGATCAAGCGGGCCGGCCCAGACATGCCTTAATTGATTATGGTAAAAGGAAAGGGAAAGAGGATGTGCTTTCTCTCTCTTTGAATTGGCATTGGAATTCAACTCTTCTCTTTCTCTGTCGAAGAACAAGTAGTTTCAGAAAGATGCTAGAGAATCTTCAGGCTCCTCCGTCAACAACGGAATCGGCCCCAGTGGTGAAGCGCTATGCTCCACCCAACCAGAGGAACCGTTCTGCTAACAGGCGCAAATCATCTGATCGGCTTGATCGGACAAACAGTGTCGGGAATGACTTAGAAAAGAATCAAGTTGCTTCTTCAAGAAGTGTTCACATTCCAGATCATGAAGATGCTGGTAGCAGTAATCTTCTTAATGAGAATCACTATTCAAGATTCATAGCTTTAGAAGGGTGTAGTTGCAGTGCAGCTGCCCAGCTTCTTAATGATCGTTGGACAGCTGCAATACAATCCTACAATAATCCCAAAGATTCATCTGAAAAGCCAGTTATGTATTCGAGTGGGACTTCAGTATGGACTGCAGCTACAAGTGCTTCCTCTTCTGTATCTCAACGGGACTTCCTGGGAGAACTTCGTCGCCAAATGCACAGTGCAAATCCCAGTTTCACTACATGA
>Glyma04g00400.3 sequence type=CDS gene model=Glyma04g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACCCAAAACTTTGCTTATTCGGACCAACGATTGGAAGTTTCCTTTTGATTAAACTTAAAGATCAAGCGGGCCGGCCCAGACATGCCTTAATTGATTATGGTAAAAGGAAAGGGAAAGAGGATGTGCTTTCTCTCTCTTTGAATTGGCATTGGAATTCAACTCTTCTCTTTCTCTGTCGAAGAACAAGTAGTTTCAGAAAGATGCTAGAGAATCTTCAGGCTCCTCCGTCAACAACGGAATCGGCCCCAGTGGTGAAGCGCTATGCTCCACCCAACCAGAGGAACCGTTCTGCTAACAGGCGCAAATCATCTGGTTGGACAGCTGCAATACAATCCTACAATAATCCCAAAGATTCATCTGAAAAGCCAGTTATGTATTCGAGTGGGACTTCAGTATGGACTGCAGCTACAAGTGCTTCCTCTTCTGTATCTCAACGGGACTTCCTGGGAGAACTTCGTCGCCAAATGCACAGTGCAAATCCCAGTTTCACTACATGA
Predicted protein sequences of Glyma04g00400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g00400.2 sequence type=predicted peptide gene model=Glyma04g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPKLCLFGPTIGSFLLIKLKDQAGRPRHALIDYGKRKGKEDVLSLSLNWHWNSTLLFLCRRTSSFRKMLENLQAPPSTTESAPVVKRYAPPNQRNRSANRRKSSDRLDRTNSVGNDLEKNQVASSRSVHIPDHEDAGSSNLLNENHYSRFIALEGCSCSAAAQLLNDRWTAAIQSYNNPKDSSEKPVMYSSGTSVWTAATSASSSVSQRDFLGELRRQMHSANPSFTT*
>Glyma04g00400.3 sequence type=predicted peptide gene model=Glyma04g00400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPKLCLFGPTIGSFLLIKLKDQAGRPRHALIDYGKRKGKEDVLSLSLNWHWNSTLLFLCRRTSSFRKMLENLQAPPSTTESAPVVKRYAPPNQRNRSANRRKSSGWTAAIQSYNNPKDSSEKPVMYSSGTSVWTAATSASSSVSQRDFLGELRRQMHSANPSFTT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
