Glyma04g00390 - SoyBase

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Report for Sequence Feature Glyma04g00390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	173072
stop:	176953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06980	AT	Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein \| chr3:2201531-2204662 FORWARD LENGTH=781	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0331	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF128	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_I1JSC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSC9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6ZND7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA FLJ16192 fis, clone BRTHA2017364, weakly similar to ATP-DEPENDENT RNA HELICASE T26G10.1 IN CHROMOSOME III n=1 Tax=Homo sapiens RepID=Q6ZND7_HUMAN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00390

Paralog	Evidence	Comments
Glyma06g00480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g002600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00390

Limit To All Plant Sequences

>Glyma04g00390.1   sequence type=CDS   gene model=Glyma04g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGGGCAACTTGTTCCTTCGAATTTGTTCCTCAATCATTCTGCTGCTACAACACTCATACCCACTTCCACTCCCCCCAGACACAGACACCTTCTCTGTATTTCTTCTGCCAATCACACAACCGCAACCGATAACGATTCTCCATTCTCAAGTTTCGGAAGAGTGAAGACTCTCCTGGTCCACAGAAGAAGAAAGGACCAAAGCCATAGACGCGCCGTTCAACTTGAAGATGATAATGATGATGATATAGCCCCTAGACCCAGACGTTCTCAGTCTCGGTCACGAGGAGGAGAAAGATGGGATATGATTCCCAATTATACTCCACAAAGCAAATCAGCGACTGACACAAAGTTTTTCAGTCTAAAGTCCTTCAAAGAAATAGGTTGCAGTGAATATATGATTGAATCCCTCCAGAAACTCTTGTTGAGCCGGCCTTCCCATGTACAGGCCATGGCTTTTGCACCTGTTATTAGTGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGTAAGACATTAGCTTATCTCGCACCAATCATCCAGCTCCTTAGACTAGAAGAGCTTGAAGGACGTAGTAGTAAATCCTCTTCACAAGCTCCTAGAGTCCTTGTCCTCGCACCCACGGCTGAGTTGGCTTCTCAGGTCTTAGATAATTGCCGCTCCTTGTCTAAATCTGGAGTTCCATTCAAGTCTATGGTTGTCACCGGAGGTTTTCGCCAAAAAACTCAATTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTCTTGTTCCTCATCCATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTATCTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCTTCACCTGTAGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCTGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTCAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTCTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAATCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTTGTTAAAGCGTTTTGATAGAAAAGGAAATCACGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGACTTCACAAGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTAGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTGCCTTCGGCTTATTAG

Predicted protein sequences of Glyma04g00390

Limit To All Plant Sequences

>Glyma04g00390.1   sequence type=predicted peptide   gene model=Glyma04g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGQLVPSNLFLNHSAATTLIPTSTPPRHRHLLCISSANHTTATDNDSPFSSFGRVKTLLVHRRRKDQSHRRAVQLEDDNDDDIAPRPRRSQSRSRGGERWDMIPNYTPQSKSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGSGKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNKIETCRKVENLLKRFDRKGNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFTRVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY*

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