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Report for Sequence Feature Glyma04g00350

Feature Type:gene_model
Chromosome:Gm04
Start:147750
stop:149717
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44270AT Annotation by Michelle Graham. TAIR10: repressor of lrx1 | chr2:18298078-18300153 REVERSE LENGTH=355 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0008033GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA processing SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0034227GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA thio-modification SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048522GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process SoyBaseN/AISS
GO:0080157GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type cell wall organization or biogenesis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000049GO-mf Annotation by Michelle Graham. GO Molecular Function: tRNA binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG2840 KOG Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily JGI ISS
PTHR11807Panther ATPASES OF THE PP SUPERFAMILY-RELATED JGI ISS
PTHR11807:SF3Panther CANCER-ASSOCIATED GENE PROTEIN JGI ISS
PF01171PFAM PP-loop family JGI ISS
UniRef100_G7J985UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytoplasmic tRNA 2-thiolation protein n=1 Tax=Medicago truncatula RepID=G7J985_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JSC3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSC3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g00350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g00350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g002200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g00350
>Glyma04g00350.2   sequence type=transcript   gene model=Glyma04g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTTTTCTGATGAAATAATAACATAAGGGCCTTTTTCTGATAAAATAATAAAGGGGTGGAGAGGAGAAGTAAACCCTAGAGTAGAGAATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGATTATCCAATTTGCTTGCTTTCTTGTACTCGCTCACAAATTGCTGTGCTTATGTTTATTATACAATGCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGATTTCCCACATCACACCTATCAGCGAGACGAGGCTTCCTGTTCCTGAAATTCAGGGTTTAAAGAAAAGTTGCACTGTTTCCAGATTATTACTAGTCAATTTAATCATATATCTTTAGCTTTATTTCTGTGGGCAACGGTCATGTTGTCATTTGTACACCAAGTCGGCTTCTCATAATCAATGGATACTAATGCTCTGGTGGAGAGAAAGTGAGCGAAGAAAAAAAAAAATAGAAGGAAATAAATATTTGAAATTTTGTGGTTGAAAGTTAACCTTTCTTTTCTCACTTTTTTTCTAATCAAACAAAAGAAAATATTGTCATCCATATTTTCCTTTGTCTACTTGTTTCAGTAACACCCGAATTCTAAGTATTAGGAGAAGACTGCTTTTTAACACCATGTTATTTATATTATATTTGTTGATTGATTAGAGATACTCTAGGTATTGTTGTTGTGGTTATTATTGTTAATGTTATTATAGTTATTGATTTATGGTTGTTGTATTATATGGAATAAAATTAAAATTTATGACATTAACCCATCTAACTATTTTTATTGGCATCAATAAATTAGGTAATTGTTCTTTAAA
Coding sequences of Glyma04g00350
>Glyma04g00350.1   sequence type=CDS   gene model=Glyma04g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGA

>Glyma04g00350.2   sequence type=CDS   gene model=Glyma04g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGA
Predicted protein sequences of Glyma04g00350
>Glyma04g00350.1   sequence type=predicted peptide   gene model=Glyma04g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGSVASDNGNESKVEKSIQGKQCTTLDF*

>Glyma04g00350.2   sequence type=predicted peptide   gene model=Glyma04g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRC*






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