SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44270 | AT | Annotation by Michelle Graham. TAIR10: repressor of lrx1 | chr2:18298078-18300153 REVERSE LENGTH=355 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0008033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA processing | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0034227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA thio-modification | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0080157 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type cell wall organization or biogenesis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000049 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2840 | KOG | Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily | JGI | ISS | |
| PTHR11807 | Panther | ATPASES OF THE PP SUPERFAMILY-RELATED | JGI | ISS | |
| PTHR11807:SF3 | Panther | CANCER-ASSOCIATED GENE PROTEIN | JGI | ISS | |
| PF01171 | PFAM | PP-loop family | JGI | ISS | |
| UniRef100_G7J985 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytoplasmic tRNA 2-thiolation protein n=1 Tax=Medicago truncatula RepID=G7J985_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JSC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSC3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g00350 not represented in the dataset |
Glyma04g00350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g002200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g00350.2 sequence type=transcript gene model=Glyma04g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATTTTTTCTGATGAAATAATAACATAAGGGCCTTTTTCTGATAAAATAATAAAGGGGTGGAGAGGAGAAGTAAACCCTAGAGTAGAGAATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGATTATCCAATTTGCTTGCTTTCTTGTACTCGCTCACAAATTGCTGTGCTTATGTTTATTATACAATGCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGATTTCCCACATCACACCTATCAGCGAGACGAGGCTTCCTGTTCCTGAAATTCAGGGTTTAAAGAAAAGTTGCACTGTTTCCAGATTATTACTAGTCAATTTAATCATATATCTTTAGCTTTATTTCTGTGGGCAACGGTCATGTTGTCATTTGTACACCAAGTCGGCTTCTCATAATCAATGGATACTAATGCTCTGGTGGAGAGAAAGTGAGCGAAGAAAAAAAAAAATAGAAGGAAATAAATATTTGAAATTTTGTGGTTGAAAGTTAACCTTTCTTTTCTCACTTTTTTTCTAATCAAACAAAAGAAAATATTGTCATCCATATTTTCCTTTGTCTACTTGTTTCAGTAACACCCGAATTCTAAGTATTAGGAGAAGACTGCTTTTTAACACCATGTTATTTATATTATATTTGTTGATTGATTAGAGATACTCTAGGTATTGTTGTTGTGGTTATTATTGTTAATGTTATTATAGTTATTGATTTATGGTTGTTGTATTATATGGAATAAAATTAAAATTTATGACATTAACCCATCTAACTATTTTTATTGGCATCAATAAATTAGGTAATTGTTCTTTAAA
>Glyma04g00350.1 sequence type=CDS gene model=Glyma04g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGA >Glyma04g00350.2 sequence type=CDS gene model=Glyma04g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGA
>Glyma04g00350.1 sequence type=predicted peptide gene model=Glyma04g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGSVASDNGNESKVEKSIQGKQCTTLDF* >Glyma04g00350.2 sequence type=predicted peptide gene model=Glyma04g00350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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