Report for Sequence Feature Glyma04g00340
Feature Type: gene_model
Chromosome: Gm04
Start: 139885
stop: 145931
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g00340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G17690 AT
Annotation by Michelle Graham. TAIR10: like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445
SoyBase E_val: 2.00E-59 ISS
GO:0000956 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process
SoyBase N/A ISS
GO:0006325 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin organization
SoyBase N/A ISS
GO:0006342 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing
SoyBase N/A ISS
GO:0006346 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing
SoyBase N/A ISS
GO:0007346 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle
SoyBase N/A ISS
GO:0009648 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism
SoyBase N/A ISS
GO:0009825 GO-bp
Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth
SoyBase N/A ISS
GO:0009910 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development
SoyBase N/A ISS
GO:0010016 GO-bp
Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0016246 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA interference
SoyBase N/A ISS
GO:0031048 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA
SoyBase N/A ISS
GO:0045814 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression, epigenetic
SoyBase N/A ISS
GO:0045857 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of molecular function, epigenetic
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0051567 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation
SoyBase N/A ISS
GO:0000791 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: euchromatin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005720 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nuclear heterochromatin
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0035064 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding
SoyBase N/A ISS
PTHR22812 Panther
CHROMOBOX PROTEIN
JGI ISS
PTHR22812:SF2 Panther
CHROMOBOX POLYCOMB - RELATED
JGI ISS
PF00385 PFAM
chromo' (CHRromatin Organisation MOdifier) domain
JGI ISS
UniRef100_B9IPZ2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chromo domain protein n=1 Tax=Populus trichocarpa RepID=B9IPZ2_POPTR
SoyBase E_val: 6.00E-70 ISS
UniRef100_I1JSC2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSC2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g00340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g00340
Paralog Evidence Comments
Glyma06g00400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g00340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g002100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g00340
Coding sequences of Glyma04g00340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00340.1 sequence type=CDS gene model=Glyma04g00340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAAGAGGAGCAGCAGCAGCAGCAGCAGTTCAGTTTTTGAGGCGAATGGAGTGGAGGAACCTCAACAACCTTCATCCTGTGCAGCAGCAGCACTTGATGAGTTGCATAAAGAGAAAAATGAGAATGGAGAAGAAACCCTCGTGCCTTCCAATCCCTATCCCAATCTTGACGATGGCTTCTATGAAATCGAAACCATACGCCGTAAGAGGCTACGCAAGGGTCAGCTCCAGTACCTAATCAAATGGCGTGGATGGCCTGAGACTGCCAACACTTGGGAACCTCTTGAAAATCTACAGTCCGTTCCTGATCTCGTTGATGCTTTTGAGGACAGCCTCAAGTCTGGAAAACATCAGAAGCGCAAGCGCAAGCATGTGGATGTGCTTCAACTCACCCTACTCAAGAAGCGCTCCGAACGTTCTACCACTTCTTACAGCCTTAGACATTTCCCACCTCTAACTCCCACTAATGCAAATGATTATGATCCAAAGCTCAGTGAACTTAAGGCACCAACACACACTGGGGTTCAGCTAGATAACCTTGCAATACATTTCCAACAACCAATTCCAAGCAGAGGAGCAAAAAGGAGAAAATCTGCTTCTTCTGTCAAGAGGTTCAAGAGAGACACCGATGCAGCTGCACTTCAACCAATTTCTGCTCCTATCAACATGCCTGATGCTAATACTGCCTGCAATATTGTCAAGATTATCAAGCCAATAGGCTATTCAGCTTCTTTATCTGACAACATGCACGATGTTTTAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGACAACAGATATCTCAAGGCATACAATCCTCTTCTGCTGATCAATTTCTATGAGATGCATCTCCGGTATACTCCTACACCGTGA
Predicted protein sequences of Glyma04g00340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g00340.1 sequence type=predicted peptide gene model=Glyma04g00340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKKRSSSSSSSSVFEANGVEEPQQPSSCAAAALDELHKEKNENGEETLVPSNPYPNLDDGFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLENLQSVPDLVDAFEDSLKSGKHQKRKRKHVDVLQLTLLKKRSERSTTSYSLRHFPPLTPTNANDYDPKLSELKAPTHTGVQLDNLAIHFQQPIPSRGAKRRKSASSVKRFKRDTDAAALQPISAPINMPDANTACNIVKIIKPIGYSASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMHLRYTPTP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
