Glyma04g00300 - SoyBase

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Report for Sequence Feature Glyma04g00300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	101780
stop:	104074
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16210	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). \| chr1:5546352-5547447 REVERSE LENGTH=234	SoyBase	E_val: 7.00E-108	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3223	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21680	Panther	UNCHARACTERIZED	JGI		ISS
PF06244	PFAM	Protein of unknown function (DUF1014)	JGI		ISS
UniRef100_G7J994	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J994_MEDTR	SoyBase	E_val: 7.00E-107	ISS
UniRef100_I1JSB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSB8_SOYBN	SoyBase	E_val: 7.00E-157	ISS

Expression Patterns of Glyma04g00300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00300

Paralog	Evidence	Comments
Glyma06g00340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g001700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g00300

Limit To All Plant Sequences

>Glyma04g00300.1   sequence type=CDS   gene model=Glyma04g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAAGAAGATGGGGGTGAACACGAAGGCGGAGGCGGCGAGGGCTCGTAAGAGCGCGGCGGATACGGAGCGGAAGGAGAAGGAGAGTCGAGAGAAGGAGGACCAGTACTGGCGAGAGGCGGAGGGTTCAAAGTCACGCGCCGCGAAGAAGAAGGAGGAAGAGGCCGAAAAGAGGGCGGAGGCAGCCGCGCGGAAAGCGGAGGCGCGACGGTTGGCGGAGCAGGAGGAGAAGGAGCTGGAGAAGTCGATGAAGAAGGTGGACAAGAAGGCGACACGGGTGTCGATCCCGGTGCCGAAGGTGACGGAGGTGGAGCTGAGGAGGCGGAGGGAGGAGGAGCAGGCGGAGGCTGAGAGGAAGGCGGAGGAGGCTAAGAAGCAGCAGAGTCGGACGGCGGCAGAGGAAGAGTACGAGAGAATGGTGCTTATTTCGAACACTAATCGCGACGATTCGATCATCGAAGCAAGAACATTGGATGATGCCATCGCTCAGATGACCGTCGTGGATAACTTGCCCCCAGATCGCCATCCAGAGAGGCGCCTCAAGGCCTCATTCAAGGCGTTTGAAGAAGCTGAGCTGCCCAAGTTGAAGGAAGAGAAACCGGGTCTTACTCACACTCAGTACAAGGACATGATATGGAAGTTATGGAAGAAATCTCCTGACAATCCTCTTAATCAAATTGCTGAGTGA

Predicted protein sequences of Glyma04g00300

Limit To All Plant Sequences

>Glyma04g00300.1   sequence type=predicted peptide   gene model=Glyma04g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKKMGVNTKAEAARARKSAADTERKEKESREKEDQYWREAEGSKSRAAKKKEEEAEKRAEAAARKAEARRLAEQEEKELEKSMKKVDKKATRVSIPVPKVTEVELRRRREEEQAEAERKAEEAKKQQSRTAAEEEYERMVLISNTNRDDSIIEARTLDDAIAQMTVVDNLPPDRHPERRLKASFKAFEEAELPKLKEEKPGLTHTQYKDMIWKLWKKSPDNPLNQIAE*

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