Glyma04g00240 - SoyBase

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Report for Sequence Feature Glyma04g00240

Feature Type:	gene_model
Chromosome:	Gm04
Start:	68065
stop:	73004
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG0037	KOG	Ca2+-binding protein, EF-Hand protein superfamily	JGI		ISS
PTHR10183	Panther	CALPAIN	JGI		ISS
PTHR10183:SF144	Panther	CALCIUM-BINDING PROTEIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_B9SII2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Programmed cell death protein, putative n=1 Tax=Ricinus communis RepID=B9SII2_RICCO	SoyBase	E_val: 6.00E-53	ISS
UniRef100_I1JSB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSB3_SOYBN	SoyBase	E_val: 4.00E-85	ISS

Expression Patterns of Glyma04g00240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00240

Paralog	Evidence	Comments
Glyma06g00290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g001200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00240

Limit To All Plant Sequences

>Glyma04g00240.2   sequence type=transcript   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGACCCTCATATTTATATATTAGTTTTTTATTTTTTAATGATTAAAAAAAATCATTATTATTTTGTTGTTTAACATAAAAACGACGGCGTTTTAATTTGGTTGGATATGTTGTTATATTGGGGTTGGGCAAGGTGAGGGGCGAAACGAAAGAGAATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGATTCAACTATATGACGGTTTGAGAAGATGATTCACAAATACTGCACTTTGTAATACCATAAAGTCATCTTAGAGTAAGTTAAATTGTGATGGTGTTGTATAAGATGAAAACATCTCGGGTTTGGATACTATTTGTCATCTGTCTGCAAAATACTGTGGTTTTTTTTTTCTTTCCAGATGATGTAATTTTGTTTATAAAACGTAAGTTGTTATAAAACATCTTGAGTTATGATAACTTGTGAAGTTGATTCCTAGAGTTTTAGAGCCAGTTATTTGTTGGAGATAAAATTTGATGTATATCCTGATTCTCATTTCTCC

>Glyma04g00240.3   sequence type=transcript   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGACCCTCATATTTATATATTAGTTTTTTATTTTTTAATGATTAAAAAAAATCATTATTATTTTGTTGTTTAACATAAAAACGACGGCGTTTTAATTTGGTTGGATATGTTGTTATATTGGGGTTGGGCAAGGTGAGGGGCGAAACGAAAGAGAATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTAAATATGATTCAACTATATGACGGTTTGAGAAGATGATTCACAAATACTGCACTTTGTAATACCATAAAGTCATCTTAGAGTAAGTTAAATTGTGATGGTGTTGTATAAGATGAAAACATCTCGGGTTTGGATACTATTTGTCATCTGTCTGCAAAATACTGTGGTTTTTTTTTTCTTTCCAGATGATGTAATTTTGTTTATAAAACGTAAGTTGTTATAAAACATCTTGAGTTATGATAACTTGTGAAGTTGATTCCTAGAGTTTTAGAGCCAGTTATTTGTTGGAGATAAAATTTGATGTATATCCTGATTCTCATTTCTCC

>Glyma04g00240.4   sequence type=transcript   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGACCCTCATATTTATATATTAGTTTTTTATTTTTTAATGATTAAAAAAAATCATTATTATTTTGTTGTTTAACATAAAAACGACGGCGTTTTAATTTGGTTGGATATGTTGTTATATTGGGGTTGGGCAAGGTGAGGGGCGAAACGAAAGAGAATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGGTGAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTAAATATGATTCAACTATATGACGGTTTGAGAAGATGATTCACAAATACTGCACTTTGTAATACCATAAAGTCATCTTAGAGTAAGTTAAATTGTGATGGTGTTGTATAAGATGAAAACATCTCGGGTTTGGATACTATTTGTCATCTGTCTGCAAAATACTGTGGTTTTTTTTTTCTTTCCAGATGATGTAATTTTGTTTATAAAACGTAAGTTGTTATAAAACATCTTGAGTTATGATAACTTGTGAAGTTGATTCCTAGAGTTTTAGAGCCAGTTATTTGTTGGAGATAAAATTTGATGTATATCCTGATTCTCATTTCTCC

>Glyma04g00240.5   sequence type=transcript   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGACCCTCATATTTATATATTAGTTTTTTATTTTTTAATGATTAAAAAAAATCATTATTATTTTGTTGTTTAACATAAAAACGACGGCGTTTTAATTTGGTTGGATATGTTGTTATATTGGGGTTGGGCAAGGTGAGGGGCGAAACGAAAGAGAATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGGTGAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGATTCAACTATATGACGGTTTGAGAAGATGATTCACAAATACTGCACTTTGTAATACCATAAAGTCATCTTAGAGTAAGTTAAATTGTGATGGTGTTGTATAAGATGAAAACATCTCGGGTTTGGATACTATTTGTCATCTGTCTGCAAAATACTGTGGTTTTTTTTTTCTTTCCAGATGATGTAATTTTGTTTATAAAACGTAAGTTGTTATAAAACATCTTGAGTTATGATAACTTGTGAAGTTGATTCCTAGAGTTTTAGAGCCAGTTATTTGTTGGAGATAAAATTTGATGTATATCCTGATTCTCATTTCTCC

Coding sequences of Glyma04g00240

Limit To All Plant Sequences

>Glyma04g00240.1   sequence type=CDS   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

>Glyma04g00240.2   sequence type=CDS   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

>Glyma04g00240.3   sequence type=CDS   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTAAATATGATTCAACTATATGA

>Glyma04g00240.4   sequence type=CDS   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTAAATATGATTCAACTATATGA

>Glyma04g00240.5   sequence type=CDS   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

Predicted protein sequences of Glyma04g00240

Limit To All Plant Sequences

>Glyma04g00240.1   sequence type=predicted peptide   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENRVILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

>Glyma04g00240.2   sequence type=predicted peptide   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENRVILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

>Glyma04g00240.3   sequence type=predicted peptide   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENRVILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCKYDSTI*

>Glyma04g00240.4   sequence type=predicted peptide   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCKYDSTI*

>Glyma04g00240.5   sequence type=predicted peptide   gene model=Glyma04g00240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

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