Glyma04g00230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g00230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	62402
stop:	65146
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g00230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20610	AT	Annotation by Michelle Graham. TAIR10: Cyclin B2;3 \| chr1:7135073-7137273 REVERSE LENGTH=429	SoyBase	E_val: 1.00E-157	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016538	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
KOG0653	KOG	Cyclin B and related kinase-activating proteins	JGI		ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF24	Panther	G2/MITOTIC-SPECIFIC CYCLIN B	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
PF02984	PFAM	Cyclin, C-terminal domain	JGI		ISS
UniRef100_G8IFS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CYC7 n=1 Tax=Rosa hybrid cultivar RepID=G8IFS5_ROSHC	SoyBase	E_val: 3.00E-172	ISS
UniRef100_UPI00023393B0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393B0 related cluster n=1 Tax=unknown RepID=UPI00023393B0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g00230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00230

Paralog	Evidence	Comments
Glyma06g00275	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g001100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g00230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g00230

Limit To All Plant Sequences

>Glyma04g00230.3   sequence type=transcript   gene model=Glyma04g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGTTTGAAATTTCAATAAGTAGCCGTTGTTGCGTTGGGCAACGGCTAGTCTGAATCACAAGTCGCACCACGACATCACCGTCTCAAATTCGCTTTTCGTCATTCCTTTTTATTTTCAGTGTTGGCTGTGCTGTCGCCTCCCCATATTCAGATTCATTTCAATTCTTCTTTTTTTTTTTTCTTTCTTCTTCTTCCTCCTATTCGGATTCGCCACATACAGATGGAGGGCTCAAAGGAAAACTGTGTGCCTCGGATTCCGCTCATACCCTCTTCAAATCTTCAAGGTCCAAGAATGAAGCCTCTCCTCCATCACCGGCTGCCTCTCGGCAACATCAGTCAGAATGTTAATATGCCTCATTCTCAAGTCAACAAACTAGATCTTTCCCGCAAGTGTACGGCTCACACAATTCAGCACCACTTCCCTCAAGAAACTAAGAAACAGAACCTGTTGGCCCCGAACCCGAGTTGCAAGTTAGATTGTGATATCGTAGATATTGATGATGACGATGGGGATGGCAGTGACGATGCCGTTCCAGTATTTGTCAAGCACACTGAAGCCATGCTTGATGAAATTGACAAGATAGAGGAAGTTGAAATGGAAGATGTGGAGGAGGAACCTGTTTTGGACATCGATGCCTGTGATAGGAAAGATCCACTTGCAGTGGTTGAGTACATAGATGATATATACAGTTTCTACAAGGACATTGAGAATTCGAGCTGTGTCTCTCCAAATTACATGACTAGTCAACTTGACATTAATGAGAGGATGAGGGCAATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACGTTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAATAAACTTCAGTTAGTTGGTGTCACAGCTATGCTAATAGCTTGTAAGTATGAGGAGGTCACAGTTCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAAATGAGGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGCTGTCTATGCCTACTCCATACATGTTCATGAGAAGATTTCTCAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTAGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTGGCTGCTGCTGCCATTTACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCACCGAGTGGTACACTGATTACTCAGAAGAGAAGCTTCTCGAATGCTCAAGGCTGATGGTTACTTTCCATCAGAAAGCTGGATCAGGGAAACTCACCGGTGTATATAGAAAGTACAATACATGGAAGTATGGCTGTGCCGCGAAAATAGAACCAGCCCTGTTTCTACTGGATAATTAAGGGAATGCAAGTAAACTTCTAGTTTCTAATGCATTGCTTTGGTTGTTTTGAGAGTTTGCTTGTGCTAGAAGTTTGTTTTGAGAGCTTCAGAGACCTATCAACAGAAGTTGGCCTTTACTCTTTCAGTAACGTGTGTCTTTTTCTTTACACTCAATCTTGGCTTTCAGGATTGTATGGACAAAGTGAATTAGCACATAAATTGCTTTTACTAATCACTGAAAGATACAGTTAGTCATATGGTTCTTGAATTAACGAAATTGTACATGTTATT

Coding sequences of Glyma04g00230

Limit To All Plant Sequences

>Glyma04g00230.1   sequence type=CDS   gene model=Glyma04g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCTCAAAGGAAAACTGTGTGCCTCGGATTCCGCTCATACCCTCTTCAAATCTTCAAGGTCCAAGAATGAAGCCTCTCCTCCATCACCGGCTGCCTCTCGGCAACATCAGTCAGAATGTTAATATGCCTCATTCTCAAGTCAACAAACTAGATCTTTCCCGCAAGTGTACGGCTCACACAATTCAGCACCACTTCCCTCAAAAACAGAACCTGTTGGCCCCGAACCCGAGTTGCAAGTTAGATTGTGATATCGTAGATATTGATGATGACGATGGGGATGGCAGTGACGATGCCGTTCCAGTATTTGTCAAGCACACTGAAGCCATGCTTGATGAAATTGACAAGATAGAGGAAGTTGAAATGGAAGATGTGGAGGAGGAACCTGTTTTGGACATCGATGCCTGTGATAGGAAAGATCCACTTGCAGTGGTTGAGTACATAGATGATATATACAGTTTCTACAAGGACATTGAGAATTCGAGCTGTGTCTCTCCAAATTACATGACTAGTCAACTTGACATTAATGAGAGGATGAGGGCAATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACGTTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAATAAACTTCAGTTAGTTGGTGTCACAGCTATGCTAATAGCTTGTAAGTATGAGGAGGTCACAGTTCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAAATGAGGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGCTGTCTATGCCTACTCCATACATGTTCATGAGAAGATTTCTCAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTAGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTGGCTGCTGCTGCCATTTACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCACCGAGTGGTACACTGATTACTCAGAAGAGAAGCTTCTCGAATGCTCAAGGCTGATGGTTACTTTCCATCAGAAAGCTGGATCAGGGAAACTCACCGGTGTATATAGAAAGTACAATACATGGAAGTATGGCTGTGCCGCGAAAATAGAACCAGCCCTGTTTCTACTGGATAATTAA

>Glyma04g00230.3   sequence type=CDS   gene model=Glyma04g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCTCAAAGGAAAACTGTGTGCCTCGGATTCCGCTCATACCCTCTTCAAATCTTCAAGGTCCAAGAATGAAGCCTCTCCTCCATCACCGGCTGCCTCTCGGCAACATCAGTCAGAATGTTAATATGCCTCATTCTCAAGTCAACAAACTAGATCTTTCCCGCAAGTGTACGGCTCACACAATTCAGCACCACTTCCCTCAAGAAACTAAGAAACAGAACCTGTTGGCCCCGAACCCGAGTTGCAAGTTAGATTGTGATATCGTAGATATTGATGATGACGATGGGGATGGCAGTGACGATGCCGTTCCAGTATTTGTCAAGCACACTGAAGCCATGCTTGATGAAATTGACAAGATAGAGGAAGTTGAAATGGAAGATGTGGAGGAGGAACCTGTTTTGGACATCGATGCCTGTGATAGGAAAGATCCACTTGCAGTGGTTGAGTACATAGATGATATATACAGTTTCTACAAGGACATTGAGAATTCGAGCTGTGTCTCTCCAAATTACATGACTAGTCAACTTGACATTAATGAGAGGATGAGGGCAATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACGTTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAATAAACTTCAGTTAGTTGGTGTCACAGCTATGCTAATAGCTTGTAAGTATGAGGAGGTCACAGTTCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAAATGAGGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGCTGTCTATGCCTACTCCATACATGTTCATGAGAAGATTTCTCAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTAGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTGGCTGCTGCTGCCATTTACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCACCGAGTGGTACACTGATTACTCAGAAGAGAAGCTTCTCGAATGCTCAAGGCTGATGGTTACTTTCCATCAGAAAGCTGGATCAGGGAAACTCACCGGTGTATATAGAAAGTACAATACATGGAAGTATGGCTGTGCCGCGAAAATAGAACCAGCCCTGTTTCTACTGGATAATTAA

Predicted protein sequences of Glyma04g00230

Limit To All Plant Sequences

>Glyma04g00230.1   sequence type=predicted peptide   gene model=Glyma04g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSKENCVPRIPLIPSSNLQGPRMKPLLHHRLPLGNISQNVNMPHSQVNKLDLSRKCTAHTIQHHFPQKQNLLAPNPSCKLDCDIVDIDDDDGDGSDDAVPVFVKHTEAMLDEIDKIEEVEMEDVEEEPVLDIDACDRKDPLAVVEYIDDIYSFYKDIENSSCVSPNYMTSQLDINERMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLERQAVIRNKLQLVGVTAMLIACKYEEVTVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSMPTPYMFMRRFLKAAHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTTEWYTDYSEEKLLECSRLMVTFHQKAGSGKLTGVYRKYNTWKYGCAAKIEPALFLLDN*

>Glyma04g00230.3   sequence type=predicted peptide   gene model=Glyma04g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSKENCVPRIPLIPSSNLQGPRMKPLLHHRLPLGNISQNVNMPHSQVNKLDLSRKCTAHTIQHHFPQETKKQNLLAPNPSCKLDCDIVDIDDDDGDGSDDAVPVFVKHTEAMLDEIDKIEEVEMEDVEEEPVLDIDACDRKDPLAVVEYIDDIYSFYKDIENSSCVSPNYMTSQLDINERMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLERQAVIRNKLQLVGVTAMLIACKYEEVTVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSMPTPYMFMRRFLKAAHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTTEWYTDYSEEKLLECSRLMVTFHQKAGSGKLTGVYRKYNTWKYGCAAKIEPALFLLDN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain