Report for Sequence Feature Glyma04g00200
Feature Type: gene_model
Chromosome: Gm04
Start: 7250
stop: 23083
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g00200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38240 AT
Annotation by Michelle Graham. TAIR10: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444
SoyBase E_val: 0 ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0006487 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation
SoyBase N/A ISS
GO:0006491 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-glycan processing
SoyBase N/A ISS
GO:0006972 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic response
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0000139 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0003827 GO-mf
Annotation by Michelle Graham. GO Molecular Function: alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
SoyBase N/A ISS
GO:0016262 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein N-acetylglucosaminyltransferase activity
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG1413
KOG
N-acetylglucosaminyltransferase I
JGI ISS
PTHR10468 Panther
ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1, 2-N-ACETYLGLUCOSAMINYLTRANSFERASE
JGI ISS
PF03071 PFAM
GNT-I family
JGI ISS
UniRef100_G7J9A8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1 3-mannosyl-glycoprotein beta-1 2-N-acetylglucosaminyltransferase n=1 Tax=Medicago truncatula RepID=G7J9A8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JSA4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSA4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g00200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g00200
Paralog Evidence Comments
Glyma06g00230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g00200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g000400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g00200
Coding sequences of Glyma04g00200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g00200.1 sequence type=CDS gene model=Glyma04g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTACAGAGGCTGATTGATAAAATGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAATGTTATTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATCTAATATAGATGGCAATGTGCGCATCAAATATAAAGATCAGTCAGACTTTGAAAACATTGCTCACCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGTGCCCAGGACAGCATATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATCTTTGAAGCTACTTCAGATCGAAGAGTCTTAA
Predicted protein sequences of Glyma04g00200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g00200.1 sequence type=predicted peptide gene model=Glyma04g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKVFCDFRFLLLVAAGVFIYIQMRLFATQSEYADRLAAAIEAENHCTSQTRSLIDQISLQQGRIVALEEERKRRDQECGQMKSLVQDLERKDLQRLIDKMQVPVAAVVIMACNRADYLERTINSVLKYQRPISSRYPLFVSQDGSNPNVKSKALSYDQLSYMQHLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEAAASLLEKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWNELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQYLEPIKLNDVKVDWKLMDLSYLLEDKYSMHFANVIKKATPVYGADMVLKASNIDGNVRIKYKDQSDFENIAHQFGIFQEWKDGVPRTAYKGVVVFRYQTSRRIFLVGPESLKLLQIEES*