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Report for Sequence Feature Glyma04g00200

Feature Type:gene_model
Chromosome:Gm04
Start:7250
stop:23083
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g00200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38240AT Annotation by Michelle Graham. TAIR10: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444 SoyBaseE_val: 0ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006491GO-bp Annotation by Michelle Graham. GO Biological Process: N-glycan processing SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0003827GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0016262GO-mf Annotation by Michelle Graham. GO Molecular Function: protein N-acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG1413 KOG N-acetylglucosaminyltransferase I JGI ISS
PTHR10468Panther ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1, 2-N-ACETYLGLUCOSAMINYLTRANSFERASE JGI ISS
PF03071PFAM GNT-I family JGI ISS
UniRef100_G7J9A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1 3-mannosyl-glycoprotein beta-1 2-N-acetylglucosaminyltransferase n=1 Tax=Medicago truncatula RepID=G7J9A8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JSA4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSA4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g00200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g00200
ParalogEvidenceComments
Glyma06g00230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g00200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g000400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g00200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g00200
>Glyma04g00200.1   sequence type=CDS   gene model=Glyma04g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTACAGAGGCTGATTGATAAAATGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAATGTTATTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATCTAATATAGATGGCAATGTGCGCATCAAATATAAAGATCAGTCAGACTTTGAAAACATTGCTCACCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGTGCCCAGGACAGCATATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATCTTTGAAGCTACTTCAGATCGAAGAGTCTTAA
Predicted protein sequences of Glyma04g00200
>Glyma04g00200.1   sequence type=predicted peptide   gene model=Glyma04g00200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKVFCDFRFLLLVAAGVFIYIQMRLFATQSEYADRLAAAIEAENHCTSQTRSLIDQISLQQGRIVALEEERKRRDQECGQMKSLVQDLERKDLQRLIDKMQVPVAAVVIMACNRADYLERTINSVLKYQRPISSRYPLFVSQDGSNPNVKSKALSYDQLSYMQHLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEAAASLLEKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWNELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQYLEPIKLNDVKVDWKLMDLSYLLEDKYSMHFANVIKKATPVYGADMVLKASNIDGNVRIKYKDQSDFENIAHQFGIFQEWKDGVPRTAYKGVVVFRYQTSRRIFLVGPESLKLLQIEES*






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