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Report for Sequence Feature Glyma03g42541

Feature Type:gene_model
Chromosome:Gm03
Start:47752092
stop:47761053
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g42541
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43970AT Annotation by Michelle Graham. TAIR10: RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545 SoyBaseE_val: 5.00E-116ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG1855 KOG Predicted RNA-binding protein JGI ISS
PTHR22792Panther LUPUS LA RIBONUCLEOPROTEIN JGI ISS
PTHR22792:SF37Panther JGI ISS
PF05383PFAM La domain JGI ISS
PF07145PFAM Ataxin-2 C-terminal region JGI ISS
UniRef100_B9SSZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO SoyBaseE_val: 2.00E-149ISS
UniRef100_UPI000233A930UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A930 related cluster n=1 Tax=unknown RepID=UPI000233A930 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g42541
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g42541 not represented in the dataset
Glyma03g42541 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42541
ParalogEvidenceComments
Glyma19g45320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42541 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g264600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g42541
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g42541
>Glyma03g42541.2   sequence type=transcript   gene model=Glyma03g42541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATCCGTAAAATTTGAGAATTGTTCTACGTCGTCAAAGACACCGATTTAGGGGTTAAAAAATATCGATTAACCTCTGATATTTCTCTTAGCTGCAGCCTGCAGTGAGACTAAGAAAATCTCCGAACCCGCTACTTCCTATTTTCTATCCTTTCAAAAGAGAAACTGGAAAAGTTAGCTAAACGTCATAGCTAGATCGTCGAACAAAACGAAAAGAAAAGCGTTGAAAATGGCTCAGGAGTCACTCTCAGAAACCCCTGATATCTCGCCCCCTTCGTCTACTGCACAATCGCTGCCAGATCCATCTCTTTCAAGGAACGTTTCTTTTAGCCGGCTCAACGCACAGGCACCAGAATTTGTGCCCACTCGCGTCTCCCCACGGGGCGATTTTCAGCAACCTAGGCTCGTTGTACCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGTCAGGTATGGTACACGTTTACTCACCGCCCCCAACTTCACAGTTCCATGTACCGATTCAAGGCCATGTCGTCCCGGTCCAGAATCACCACCACCATCTTGCCCATCAGCACCACGTTCCGGCTCACTACCGCTCTCATCATCACCCGCATCAGTATTATGTTAGCTCCGATTCTGCCGTGCAGCAGCCTCAAGTTGACCCAGATCATGCTCCTTCCAAAAGCAAGATGTCTGACGAAGCCAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCATAGCCAGTCACTCCCAACTTGCAACTGTTTTAAGGAACTCGTCAAAGCTCGTGGTCAGTGAAGACGGAAAGAAAATCAAACGCCAGTATCCCCTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCACTGCCATCAGAATCTTATGAAGGTTTTCTCAGCAGTTGGGAGTGTGAAGACTATCCGTACCTGTCCACCTCAAACTTCCAATAGTGGGGCTTCTGCTACTTCAAGATTGGGAAAAGTTGATGGGATGCCTTTATCTAACAAGTTGCATGCATTTGTTGAATATGGATCTGTTGAGCTGGCTGAGAGAGCTGTTGCTGAGCTGAATGATGAGGGAAACTGGCGGAGTGGCCTCCGGATTCGCCTGATGCTTAGACGCATGTCTAAACCTGCTCAAGGACGGGGAAAGAAGGGACTTGATGTTGAAGTTGGCTGTGATGAGGATTATACTTCTGTGCCTGAGCCACAGGCAAGTGAGAAACAATTAGAAGATGCTTCCTTTCCTGATACTTTGCTGCTTGAACATGCGGGAGAAGAGCATGGTTATGACAAAGAGAGTGGGCAAAGGAAAGGTCGTAGCCGGGGCCGGGGTAAGGGACGTGGCCGAGTTCATTGTCATCAGAATAATCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACTGATCAAGTCATTGCCAAGCAACCCCCTGGGCCCCGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGCCGGTTGCTGTTAATATAGCGTAATTTGTTTGATCAAATGCCGATACAAGTTTGTAGTTGTGCTTGTAGCGAGTATATGTTGGTGCTGTAACAGTGTGATTGTGACAGTACTAGTCTGGCTGGGGCAATTCTAAAACAGTCTTCTGTTTTTTTCTTTTTTGTCTTTTGGAGATGCTGTGGCCTATGGCTAACAGCGGAGAAAGTAGAAAAAAGAAATTTAAGGATTGACCAGAGTGATTAATTGATTCAAATCAATCCGAACAGTTTAGATTTATAGATCAAAATCGTTCATGTAGGAGTTGTATCATGAGTTTAGATTTATAGATCAATTAACCCATTGATTTGATCCTTAAA
Coding sequences of Glyma03g42541
>Glyma03g42541.1   sequence type=CDS   gene model=Glyma03g42541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGGAGTCACTCTCAGAAACCCCTGATATCTCGCCCCCTTCGTCTACTGCACAATCGCTGCCAGATCCATCTCTTTCAAGGAACGTTTCTTTTAGCCGGCTCAACGCACAGGCACCAGAATTTGTGCCCACTCGCGTCTCCCCACGGGGCGATTTTCAGCAACCTAGGCTCGTTGTACCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGTCAGGTATGGTACACGTTTACTCACCGCCCCCAACTTCACAGTTCCATGTACCGATTCAAGGCCATGTCGTCCCGGTCCAGAATCACCACCACCATCTTGCCCATCAGCACCACGTTCCGGCTCACTACCGCTCTCATCATCACCCGCATCAGTATTATGTTAGCTCCGATTCTGCCGTGCAGCAGCCTCAAGTTGACCCAGATCATGCTCCTTCCAAAAGCAAGATGTCTGACGAAGCCAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCATAGCCAGTCACTCCCAACTTGCAACTGTTTTAAGGAACTCGTCAAAGCTCGTGGTCAGTGAAGACGGAAAGAAAATCAAACGCCAGTATCCCCTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCACTGCCATCAGAATCTTATGAAGGTTTTCTCAGCAGTTGGGAGTGTGAAGACTATCCGTACCTGTCCACCTCAAACTTCCAATAGTGGGGCTTCTGCTACTTCAAGATTGGGAAAAGTTGATGGGATGCCTTTATCTAACAAGTTGCATGCATTTGTTGAATATGGATCTGTTGAGCTGGCTGAGAGAGCTGTTGCTGAGCTGAATGATGAGGGAAACTGGCGGAGTGGCCTCCGGATTCGCCTGATGCTTAGACGCATGTCTAAACCTGCTCAAGGACGGGGAAAGAAGGGACTTGATGTTGAAGTTGGCTGTGATGAGGATTATACTTCTGTGCCTGAGCCACAGGCAAGTGAGAAACAATTAGAAGATGCTTCCTTTCCTGATACTTTGCTGCTTGAACATGCGCAGGGAGAAGAGCATGGTTATGACAAAGAGAGTGGGCAAAGGAAAGGTCGTAGCCGGGGCCGGGGTAAGGGACGTGGCCGAGTTCATTGTCATCAGAATAATCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACTGATCAAGTCATTGCCAAGCAACCCCCTGGGCCCCGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGCCGGTTGCTGTTAATATAGCGTAA

>Glyma03g42541.2   sequence type=CDS   gene model=Glyma03g42541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGGAGTCACTCTCAGAAACCCCTGATATCTCGCCCCCTTCGTCTACTGCACAATCGCTGCCAGATCCATCTCTTTCAAGGAACGTTTCTTTTAGCCGGCTCAACGCACAGGCACCAGAATTTGTGCCCACTCGCGTCTCCCCACGGGGCGATTTTCAGCAACCTAGGCTCGTTGTACCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGTCAGGTATGGTACACGTTTACTCACCGCCCCCAACTTCACAGTTCCATGTACCGATTCAAGGCCATGTCGTCCCGGTCCAGAATCACCACCACCATCTTGCCCATCAGCACCACGTTCCGGCTCACTACCGCTCTCATCATCACCCGCATCAGTATTATGTTAGCTCCGATTCTGCCGTGCAGCAGCCTCAAGTTGACCCAGATCATGCTCCTTCCAAAAGCAAGATGTCTGACGAAGCCAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCATAGCCAGTCACTCCCAACTTGCAACTGTTTTAAGGAACTCGTCAAAGCTCGTGGTCAGTGAAGACGGAAAGAAAATCAAACGCCAGTATCCCCTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCACTGCCATCAGAATCTTATGAAGGTTTTCTCAGCAGTTGGGAGTGTGAAGACTATCCGTACCTGTCCACCTCAAACTTCCAATAGTGGGGCTTCTGCTACTTCAAGATTGGGAAAAGTTGATGGGATGCCTTTATCTAACAAGTTGCATGCATTTGTTGAATATGGATCTGTTGAGCTGGCTGAGAGAGCTGTTGCTGAGCTGAATGATGAGGGAAACTGGCGGAGTGGCCTCCGGATTCGCCTGATGCTTAGACGCATGTCTAAACCTGCTCAAGGACGGGGAAAGAAGGGACTTGATGTTGAAGTTGGCTGTGATGAGGATTATACTTCTGTGCCTGAGCCACAGGCAAGTGAGAAACAATTAGAAGATGCTTCCTTTCCTGATACTTTGCTGCTTGAACATGCGGGAGAAGAGCATGGTTATGACAAAGAGAGTGGGCAAAGGAAAGGTCGTAGCCGGGGCCGGGGTAAGGGACGTGGCCGAGTTCATTGTCATCAGAATAATCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACTGATCAAGTCATTGCCAAGCAACCCCCTGGGCCCCGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGCCGGTTGCTGTTAATATAGCGTAA
Predicted protein sequences of Glyma03g42541
>Glyma03g42541.1   sequence type=predicted peptide   gene model=Glyma03g42541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQESLSETPDISPPSSTAQSLPDPSLSRNVSFSRLNAQAPEFVPTRVSPRGDFQQPRLVVPSPSPSPPPPPPPPPPASGMVHVYSPPPTSQFHVPIQGHVVPVQNHHHHLAHQHHVPAHYRSHHHPHQYYVSSDSAVQQPQVDPDHAPSKSKMSDEASQKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIASHSQLATVLRNSSKLVVSEDGKKIKRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNSGASATSRLGKVDGMPLSNKLHAFVEYGSVELAERAVAELNDEGNWRSGLRIRLMLRRMSKPAQGRGKKGLDVEVGCDEDYTSVPEPQASEKQLEDASFPDTLLLEHAQGEEHGYDKESGQRKGRSRGRGKGRGRVHCHQNNRVGTPPSNNTIFTDQVIAKQPPGPRMPDGTRGFSMGRGKPVAVNIA*

>Glyma03g42541.2   sequence type=predicted peptide   gene model=Glyma03g42541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQESLSETPDISPPSSTAQSLPDPSLSRNVSFSRLNAQAPEFVPTRVSPRGDFQQPRLVVPSPSPSPPPPPPPPPPASGMVHVYSPPPTSQFHVPIQGHVVPVQNHHHHLAHQHHVPAHYRSHHHPHQYYVSSDSAVQQPQVDPDHAPSKSKMSDEASQKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIASHSQLATVLRNSSKLVVSEDGKKIKRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNSGASATSRLGKVDGMPLSNKLHAFVEYGSVELAERAVAELNDEGNWRSGLRIRLMLRRMSKPAQGRGKKGLDVEVGCDEDYTSVPEPQASEKQLEDASFPDTLLLEHAGEEHGYDKESGQRKGRSRGRGKGRGRVHCHQNNRVGTPPSNNTIFTDQVIAKQPPGPRMPDGTRGFSMGRGKPVAVNIA*






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