Glyma03g42480 - SoyBase

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Report for Sequence Feature Glyma03g42480

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47683174
stop:	47688487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13420	AT	Annotation by Michelle Graham. TAIR10: high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785	SoyBase	E_val: 0	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0009674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium:sodium symporter activity	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02705	PFAM	K+ potassium transporter	JGI		ISS
UniRef100_A2CIZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HAK5 n=1 Tax=Solanum lycopersicum RepID=A2CIZ6_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_I1NCT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42480

Paralog	Evidence	Comments
Glyma19g45260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g264100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g42480

Limit To All Plant Sequences

>Glyma03g42480.2   sequence type=CDS   gene model=Glyma03g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAGAAGCAGATCGAACGAGCATCGAGGAAGAGGTGGACACAGGAAAGGAGACTGCAGAGAAGAACCTGATGAAGCCGAAAGACCCAAAGGTACCATGGGCAAAGCTACGCCGCGTAGATTCTCTCAATTTAGAAGCTGGAAGAGTTTCTATGGTTGCACACGATCCCTACCAGATGGATTGGAGGACGACGCTGAGCTTAGCATTTCAAAGCATAGGGGTTGTATATGGTGATATTGGTACATCACCACTTTATGTGTATGCAAGCACTTTCACTAAAAAAATTAACAACACTGATGACATTCTTGGTGTCTTGTCTCTCATCATCTATTCCATTGTGCTCATACCTTTGCTTAAATATGTCTTCATCGTTTTGTGGGCCAACGACAACGGCAACGGTGGAGCAATTGCACTCTATTCGCTAATCTTTAGGCATATAAAGATGAGTTTGATTCCAAATCAACAACCAGAGGACAGGGAGCTTTCTAACTACAAACTTGAAACACCGTCTACTGAGTTTAAACGAGCCCAGAAACTAAAGCAGAAGCTTGAGGACAGTCATGTTGCGCGGATTGTGCTTTTACTTTTAGCTATAATGGGAACTTCCATGGTCATAGGAGAAGGGATTCTTACGCCATCAATTTCAGTCCTTTCTGCGGTAAGTGGGATCAGTACATCTTTAGGTCAAGATGCTGCTGTGGGGATCACTATAGCAATCTTGGCAGTCCTATTTTATGTGCAACGATTTGGTACAGATAAAGTGGGTTTCTCATTCGCTCCAATAATTTTGGTGTGGTTTTTATTCATCGGTGGGATTGGCCTTTACAATTTATTTAAATATGACATTGGCGTATTACGTGCTTTTAATCCAAAATATATATATGATTACTTCAAACGGAACGGCAAGGAAGGATGGTTATCGCTTGGTGGAGTCTTTTTGTGCATAACAGGATCCCAGGCCATGTTTGCTGACTTGGGTCACTTTAATGTACGATCCATTCAAATTAGCTTTTCTTGCATTACATGTCCTGCAATAGTGGTTGCATACATTGGGCAAGCAGCATTTCTACGGAAGTTCCCTGAGAAAGTGGCTAATACCTTCTATGATAGTGTACCGGATCCCTTATATTGGCCAACATTTGTTGTGGCTTTTGCTGCTGCCATTATAGCCAGTCAGGCAATGATTTCAGGAGCATTCTCTATTATATCCCAGGCCATAAGTCTAGGTTGTTTCCCAAGAGTTAGGGTAGTGCACACTTCCGTTAAACATCAAGGTCAGGTGTATATTCCTGAGGTCAACTACATGTTCATGATTGCATGTATTGTGGTCTGTGCTGCCTTCAAGACCACAGAAAAGATTTGCCATGCATATGGGATGGCAGTTATTGGTGATATGATGATCACAACAACTCTAGCATCGCTTATAATGCTTGTTTTGTGGAAAAAGAGTCGGTGGCGCGTGGGTGTGTTCTTTTTGGGATTTGGCTTCATTGAGATTGTTTATTTCTCTTCTCAACTAACCAAGTTTACAGCAGGAGGGTATCTTCCAATTGTATCAGCTATGTTCTTGACGGCGGTGATGGGAATATGGCATTATGTGCACAAAGAAAGATACATGTTTGAACTGAAAAACAAGGTTTCAAGTGCGTATTTGAATGAAGTGGCCAACAACCCAGACGTAAGGCGAGTGCCCGGAATAGGACTTCTGTACGAATTGATACTTGGACACTCCAACATTCTATTTAACCATTAA

Predicted protein sequences of Glyma03g42480

Limit To All Plant Sequences

>Glyma03g42480.2   sequence type=predicted peptide   gene model=Glyma03g42480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEADRTSIEEEVDTGKETAEKNLMKPKDPKVPWAKLRRVDSLNLEAGRVSMVAHDPYQMDWRTTLSLAFQSIGVVYGDIGTSPLYVYASTFTKKINNTDDILGVLSLIIYSIVLIPLLKYVFIVLWANDNGNGGAIALYSLIFRHIKMSLIPNQQPEDRELSNYKLETPSTEFKRAQKLKQKLEDSHVARIVLLLLAIMGTSMVIGEGILTPSISVLSAVSGISTSLGQDAAVGITIAILAVLFYVQRFGTDKVGFSFAPIILVWFLFIGGIGLYNLFKYDIGVLRAFNPKYIYDYFKRNGKEGWLSLGGVFLCITGSQAMFADLGHFNVRSIQISFSCITCPAIVVAYIGQAAFLRKFPEKVANTFYDSVPDPLYWPTFVVAFAAAIIASQAMISGAFSIISQAISLGCFPRVRVVHTSVKHQGQVYIPEVNYMFMIACIVVCAAFKTTEKICHAYGMAVIGDMMITTTLASLIMLVLWKKSRWRVGVFFLGFGFIEIVYFSSQLTKFTAGGYLPIVSAMFLTAVMGIWHYVHKERYMFELKNKVSSAYLNEVANNPDVRRVPGIGLLYELILGHSNILFNH*

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