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Report for Sequence Feature Glyma03g42455

Feature Type:gene_model
Chromosome:Gm03
Start:47667801
stop:47668862
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g42455
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01080AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231 SoyBaseE_val: 3.00E-11ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_B4FAU0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Harpin-induced protein n=1 Tax=Zea mays RepID=B4FAU0_MAIZE SoyBaseE_val: 2.00E-11ISS
UniRef100_B9N7H4UniRef Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7H4_POPTR SoyBaseE_val: 1.00E-32ISS

Expression Patterns of Glyma03g42455
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g42455 not represented in the dataset
Glyma03g42455 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g42455 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g263800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g42455
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g42455
>Glyma03g42455.1   sequence type=CDS   gene model=Glyma03g42455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCCAAAAATTTGCGCATTGCCTCCGAGAGATCACTTAACTTCTTTTCACCCCTGCCTACTGCTCATGTTAAATAAATGCTGTTTCTTCCTTTTGATCATATGCATGGTGGTTGGATTAGCCACTTTTTTTATGATCCTCATCATTAGACCCCACAAGCCTGTTTTCTCTGTTCGGGAGGTTAAAATAAACTTTTACAAGATTGATAATGATAGTTCTAATCTAACTCTGCTGGTTTCATCTGTAATCTACTTAACCCTCAATGCAGAAAATCATAATAAGTTTGGCATAGGTTTTAGTTCATCAAGGTTTCTTGTTTATCATGAAGGTTTGCATATAGGAACTATTAGAATTCCTTGGTTTTTTCAACCTCCTCACAGTGAAAACGTGAGTGTACCATCTCGTGTCTTATTGCATAGTGCCAATCTCACCAAAATCATCGCCAACACATCGTTACAAGAAATTTCAAAGCAAAACATGGCACAGATGAGGATCATAGGGGATTCTAGAGCCCACGTGTGGGTACTTCATATAAAACTTTTTGAAATTATGGTTAGTTCTGCCTTTTTTCCTTTTTTAATTCTCCATTTTTTTGGATTCAACTACATTTTGAGCTACAATACTTAA
Predicted protein sequences of Glyma03g42455
>Glyma03g42455.1   sequence type=predicted peptide   gene model=Glyma03g42455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LPKICALPPRDHLTSFHPCLLLMLNKCCFFLLIICMVVGLATFFMILIIRPHKPVFSVREVKINFYKIDNDSSNLTLLVSSVIYLTLNAENHNKFGIGFSSSRFLVYHEGLHIGTIRIPWFFQPPHSENVSVPSRVLLHSANLTKIIANTSLQEISKQNMAQMRIIGDSRAHVWVLHIKLFEIMVSSAFFPFLILHFFGFNYILSYNT*






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