Glyma03g42450 - SoyBase

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Report for Sequence Feature Glyma03g42450

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47664595
stop:	47666895
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53910	AT	Annotation by Michelle Graham. TAIR10: related to AP2 12 \| chr1:20135242-20136581 FORWARD LENGTH=356	SoyBase	E_val: 5.00E-61	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0070483	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of hypoxia	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B2ZRG3	UniRef	Annotation by Michelle Graham. Best UniRef hit: EREBP/AP2 transcription factor n=1 Tax=Glycine max RepID=B2ZRG3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B2ZRG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EREBP/AP2 transcription factor n=1 Tax=Glycine max RepID=B2ZRG3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42450

Paralog	Evidence	Comments
Glyma19g45200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g263700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g42450

Limit To All Plant Sequences

>Glyma03g42450.2   sequence type=transcript   gene model=Glyma03g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATAGTAACACTGCTTACTCCCCCTTCTCCATTTACCGACATCCGAGAGCCTTCATTTGCATTCAACCAAAACGGACGCTTTTGTTATTCTTCGTGTCTTGTTGTGTTTTTCATCTGAGATGTGTGGAGGAGCTATCATCTCTGATTTCATTCCGGCGGCGGCGATCGCCGGGTCTCGCCGCCTGACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGGAAGTCTGACTTGGACGTTGACTTCGAGGCTGATTTCAGGGATTTTAAAGACGATTCTGATATCGACGACGACGACGACGATCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCTCTGTCTACGGCAGCGAAATCTGTGGCATTCCAAGGTCGGGCTGAGATATCTGCAAATAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGCACCAGGTACTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTTAAGACTGTTCAGCCCAATCTGGGTCACAAGTTCAGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAGCCAGTATGCTAACATGGCTTCCTTCCCTGGCAGTGGAAATGGGCTAAGATCCCTTCCTTCGTCTGATGATGCAACCCTTTACTTCAGTTCAGATCAAGGGAGTAATTCATTTGATTATGCTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCAGCCTAACTCTCAGAATGTGGTATCTATTGAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGTGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTTTTCTGAACCGCTTTTTCTTTGGTCTCCCTGTGTGTAAATAAAGCTACAAGTTGTTTTTCTCTGTTTTTGATTTTTGTTGCATTTGTTGTTCTCTTGTTGGACACATCCCCCCATGTGTCTGAAAAAAAAAATGTAATTTCCATTTTTGTTGCTTTCTGGAATGGTTGTCATCCGTGTTGAAGATGGAGTTAAAACAATTAACTCGCTCAAGCATCTCTTGTATCTAAAGTATGGGGCTATATAGTTATTTAGGTGTCCTTTGCCTTGTCAAAGGCCTTAGTTTTGGGGAAATCTCGATTGTTGTTCGAGGGTGATTATATATGATCTGTGAAACAATCTTGGCTGCTGATAATTTTTAACTGGGTTGTTTCTCTATGGTTATACTCCTATGACAAAATTTGAATGATGAAACAAAATGTAGCTGTGTGGGAGCATCAGCTGGTGACACGGGGCATGG

Coding sequences of Glyma03g42450

Limit To All Plant Sequences

>Glyma03g42450.1   sequence type=CDS   gene model=Glyma03g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGAGGAGCTATCATCTCTGATTTCATTCCGGCGGCGGCGATCGCCGGGTCTCGCCGCCTGACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGGAAGTCTGACTTGGACGTTGACTTCGAGGCTGATTTCAGGGATTTTAAAGACGATTCTGATATCGACGACGACGACGACGATCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCTCGTCTGTCTACGGCAGCGAAATCTGTGGCATTCCAAGGTCGGGCTGAGATATCTGCAAATAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGCACCAGGTACTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTTAAGACTGTTCAGCCCAATCTGGGTCACAAGTTCAGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAGCCAGTATGCTAACATGGCTTCCTTCCCTGGCAGTGGAAATGGGCTAAGATCCCTTCCTTCGTCTGATGATGCAACCCTTTACTTCAGTTCAGATCAAGGGAGTAATTCATTTGATTATGCTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCAGCCTAACTCTCAGAATGTGGTATCTATTGAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGTGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTTTTCTGA

>Glyma03g42450.2   sequence type=CDS   gene model=Glyma03g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGAGGAGCTATCATCTCTGATTTCATTCCGGCGGCGGCGATCGCCGGGTCTCGCCGCCTGACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGGAAGTCTGACTTGGACGTTGACTTCGAGGCTGATTTCAGGGATTTTAAAGACGATTCTGATATCGACGACGACGACGACGATCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCTCTGTCTACGGCAGCGAAATCTGTGGCATTCCAAGGTCGGGCTGAGATATCTGCAAATAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGCACCAGGTACTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTTAAGACTGTTCAGCCCAATCTGGGTCACAAGTTCAGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAGCCAGTATGCTAACATGGCTTCCTTCCCTGGCAGTGGAAATGGGCTAAGATCCCTTCCTTCGTCTGATGATGCAACCCTTTACTTCAGTTCAGATCAAGGGAGTAATTCATTTGATTATGCTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCAGCCTAACTCTCAGAATGTGGTATCTATTGAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGTGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTTTTCTGA

Predicted protein sequences of Glyma03g42450

Limit To All Plant Sequences

>Glyma03g42450.1   sequence type=predicted peptide   gene model=Glyma03g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFIPAAAIAGSRRLTADYLWPDLKKRKSDLDVDFEADFRDFKDDSDIDDDDDDHQVKPFAFAASSRLSTAAKSVAFQGRAEISANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEAPGTSSVKRSKVNPQENLKTVQPNLGHKFSAGNNHMDLVEQKPLVSQYANMASFPGSGNGLRSLPSSDDATLYFSSDQGSNSFDYAPEISSMLSAPLDCESHFVQNANQQQPNSQNVVSIEDDSAKTLSEELVDIESELKFFQMPYLEGSWGDTSLESLLSGDTTQDGGNLMNLWCFDDIPSMAGGVF*

>Glyma03g42450.2   sequence type=predicted peptide   gene model=Glyma03g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFIPAAAIAGSRRLTADYLWPDLKKRKSDLDVDFEADFRDFKDDSDIDDDDDDHQVKPFAFAASSLSTAAKSVAFQGRAEISANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEAPGTSSVKRSKVNPQENLKTVQPNLGHKFSAGNNHMDLVEQKPLVSQYANMASFPGSGNGLRSLPSSDDATLYFSSDQGSNSFDYAPEISSMLSAPLDCESHFVQNANQQQPNSQNVVSIEDDSAKTLSEELVDIESELKFFQMPYLEGSWGDTSLESLLSGDTTQDGGNLMNLWCFDDIPSMAGGVF*

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