SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72320 | AT | Annotation by Michelle Graham. TAIR10: pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753 | SoyBase | E_val: 0 | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0010252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin homeostasis | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2188 | KOG | Predicted RNA-binding protein, contains Pumilio domains | JGI | ISS | |
| PTHR13102 | Panther | PROTEIN C14ORF21 | JGI | ISS | |
| PF00806 | PFAM | Pumilio-family RNA binding repeat | JGI | ISS | |
| UniRef100_D7KZC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: APUM23 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KZC3_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A929 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A929 related cluster n=1 Tax=unknown RepID=UPI000233A929 | SoyBase | E_val: 0 | ISS |
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Glyma03g42410 not represented in the dataset |
Glyma03g42410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g263200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g42410.1 sequence type=CDS gene model=Glyma03g42410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCTATTGGTTCAAAAACATTGGTGTCAAGAAGCTCAATGGGCGAGCACGACTATGAACCCCTCAAACAAGGCAAAACTAAGAGGAGGAAGCATAAGAAAGGAGGATCCACTCATGCATTCGATTCCAACTCCTTCACTTCTCCGCCTCAACTATCCCGTGTTAGGAAACAGCTTGACCCTGAAACAACCCAATACTTCTCTGAAATTTCTAATCTTTTTGAAAGTGACGGGGTTGAATTGGAGGATCGATCACTTATATGTGCTAATGCTCTCGAAGAAACCAAGGGGAAAGAATTCGAAATTGCAACTGATTATATTCTTAGCCACACTCTCGAGACCATTCTCCAGGGCTGTGATGTACACCATCTTTGTGATTTCCTTCACACTTCTGCTAACCACTTCCCCTATATTGCAATGGATAGATCTGGTTCTCATGTCGCTGAGACCTCCATCAAGTCTTTAGCTGTTCATCTCCAGGACGACGATGACGTCGTTCGCCCTCTCGTTGAGGAGGCGTTAACCATGATATGCAAGGTGATTGCAGCAAATTCTGTTGATGTCATGTGCAACTGCTATGGTTCTCACGTGCTTCGGACTCTTCTTTGCCTTTGTAGAGGAGTACCATTAGATAAGTCCGGATACTATTTATCAAAATCAACTACAGTATTAGCAGACCGGTTGAATTCGAAGGAGTTTTCTTCAAAAAAATATGATGCAACAAATTTTCAGCCTGGATTTCCAAATTTACTGAAATCACTTGTGTCAGATATGTTAAAGCATGCTAAGAAATGTATCAAGATACTACAAGTTGACCAATTCAGCAGTTTGGTTTTCCAGACAGTGCTGAGGGTCTTGGCAGGCGATGATGAAGAGTTGTTACATGTGATTCCTATCCTTCTTGGCTGCAAGGATAAGAATAATGCAGAGGACAATTTTATAGGCACTAGAGTAGTAGCGGAGCTCAAGAATTTGTTAAAAGAATCTAAATTTAGCCATCTAATGGAGGTTGTTTTGGAAGTATCTCCTGAGGCCTTATTCAATGAATTATTCACTAAAGTATTCAGGAATTCCTTGTTTGAGTTATCATCTCATCAACATGGAAACTTTGTTGTTCAAGCATTAATTTCTTATGCAAGCAATCAAGATCTGATGGAGTTGATTTGGGAAGAACTTGGGCCAAATTTGGAGGGTCTTTTCAAAATGGGAAGGTCAGGAGTTGTTGCTTCACTTGTTGCTGCCAGTGAAAGGCTTCATATTAATGAACACAAGTGCTGTCAAGTCCTTGCTGAAGCAGTGTGTCCAGTGGATGAGTCTCCAAAATGGATTGTTCCAAGACTATTGTTTCTTGATAGCTGTTTCACAAGTGAAGATAAGTCCAATTGGAGCTGGCAAAGTGGTTCTAAAATGCATGTCATGGGTTCTCTGATCCTACAGACAGTATTCCGTTTTAGAAGTGAATGTATACAACCTTATATCATCAGTATAACTTCCATGGAAGCGACTCATGTGCTTGAAGCAGTGGTAGATGCAAGAGGGTCACATGTTATTGAGGCTTTTCTATGTTCGGGAGCTTCTGGGAAACAGAAGCGCAGATTGGTTACAAAACTACAAGGGCATTTTGGAGAGGTTGCTCTCACCTCATCTGGTGCTTTTACCATTGAAAAGTGCTTCACTGCCAGTAATCTGTCACTAAGAGAGGCTATAGTGTCTGAGATGTTGGCTGTGCGAAGTGATCTTTCCAAGGCAAAGCAGGGCTCTTACCTATTGAGGAAACTAGATATTGACGGATATGCTGCGAATCCTGATCATTGGAGGTCAAAACAAGCATCCAAAGAATCTACTTATAAAGATTTTTATACCATGTTTGGTTCCAGTGATACAAAGTTGACGGAAAATGATGCCTTTCTTGCTGACACTTCGAATAATAAATCAAATAAAAAAACTGTAAAGGAAATGAGGAAAGAAATTGACCAATCCCTAGGTTCTGGTGCACCATTTCTGAGCACCCAAAACTTCAAGAAAAACCCAAAAAAAGAAAAGCACAAAAGTAAGAAAAATGCTCAGGTTAGTGGAGATGATGTTAACTCTAATAGGAAGAAGAAAAGATCTAACAAGGAAAAGGTTGAAAGTGGGTTTGATATTGCTGCTAAGAAGACATTGAAGAAACGACGAAGAGATGATGACCTTTCTGAGGCTTCTCTGAAGAAAGTGAAGGCACCAAATGCAGAGTGA
>Glyma03g42410.1 sequence type=predicted peptide gene model=Glyma03g42410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSIGSKTLVSRSSMGEHDYEPLKQGKTKRRKHKKGGSTHAFDSNSFTSPPQLSRVRKQLDPETTQYFSEISNLFESDGVELEDRSLICANALEETKGKEFEIATDYILSHTLETILQGCDVHHLCDFLHTSANHFPYIAMDRSGSHVAETSIKSLAVHLQDDDDVVRPLVEEALTMICKVIAANSVDVMCNCYGSHVLRTLLCLCRGVPLDKSGYYLSKSTTVLADRLNSKEFSSKKYDATNFQPGFPNLLKSLVSDMLKHAKKCIKILQVDQFSSLVFQTVLRVLAGDDEELLHVIPILLGCKDKNNAEDNFIGTRVVAELKNLLKESKFSHLMEVVLEVSPEALFNELFTKVFRNSLFELSSHQHGNFVVQALISYASNQDLMELIWEELGPNLEGLFKMGRSGVVASLVAASERLHINEHKCCQVLAEAVCPVDESPKWIVPRLLFLDSCFTSEDKSNWSWQSGSKMHVMGSLILQTVFRFRSECIQPYIISITSMEATHVLEAVVDARGSHVIEAFLCSGASGKQKRRLVTKLQGHFGEVALTSSGAFTIEKCFTASNLSLREAIVSEMLAVRSDLSKAKQGSYLLRKLDIDGYAANPDHWRSKQASKESTYKDFYTMFGSSDTKLTENDAFLADTSNNKSNKKTVKEMRKEIDQSLGSGAPFLSTQNFKKNPKKEKHKSKKNAQVSGDDVNSNRKKKRSNKEKVESGFDIAAKKTLKKRRRDDDLSEASLKKVKAPNAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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