Glyma03g42310 - SoyBase

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Report for Sequence Feature Glyma03g42310

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47571085
stop:	47572616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61470	AT	Annotation by Michelle Graham. TAIR10: photosystem I light harvesting complex gene 2 \| chr3:22745736-22747032 FORWARD LENGTH=257	SoyBase	E_val: 9.00E-139	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0009768	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009782	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I antenna complex	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_B9GML1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Light-harvesting complex I protein Lhca2 n=1 Tax=Populus trichocarpa RepID=B9GML1_POPTR	SoyBase	E_val: 1.00E-161	ISS
UniRef100_I1JS58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS58_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g42310 not represented in the dataset	Glyma03g42310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g42310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g262300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g42310

Limit To All Plant Sequences

>Glyma03g42310.2   sequence type=transcript   gene model=Glyma03g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATACATCAAACATATACACAAAAGAGCACTGACCAAACCATTTTATTTTATTTTTGAATCAAGGGTGAGGGCCTTCCATGGCTTCCGCTTGTGCTTCCTCTGCAATTACAGCTGTTGCCATCTCTACGCCGAGTTCCGGGCAGAAGAATGGATCAGGAGGTTGTTTTCTTAGTGGAAGGAAATTGAGGGTGAAAAAGGAGAGAGCAGCAATTGGAGGACGATCGATGGGCACTACAGTGTGCGCAGTTGCTGAGCCTGACAGACCTCTATGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCACTCTACCTGGAGACTTCGGCTTTGACCCTCTTGGTCTTGGATCTGACCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACAAAGATTGGTGTCTTGAACACTCCTTCATGGTACTCAGCTGGAGAGCTGGAATACTTCACGGACACTACTACCCTCTTCATAGTTGAGCTCTTTTTCATTGGCTGGGCCGAGGGTAGAAGATGGGCTGACATAATCAAGCCAGGCTGTGTCAACACTGACCCCATCTTTCCCAACAACAAGCTCACCGGAACCGATGTGGGTTACCCTGGTGGCCTTTGGTTTGACCCCCTTGGTTGGGGAACCGGTTCTCCTCAGAAGATCAAGGACTTGAGAACTAAGGAGATCAAGAATGGCAGACTGGCCATGCTTGCTGTCATGGGTGCATGGTTCCAGCACATCTACACTGCCACCGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGAAAAGGCTAAGATCAACAATCAGATTACCAGCTGTTTGGGATGAGAGGAGTGTTTATATATGTCTGTAGAAATTAAGCTTGTAATATGGCTACTTCTATGTCATATATGCACATAATATCATAATCCAACGTGCCGACACCTATTTAAGTTTTAGATGCCATGAATGTAAGTTCAGGTAATAATCCCATTTGTGCATAAGATCATAACCCACCTTGAGTATATTAATTTCATCATTCACGGCAAAATTAATCTGAGAAAAAAAAAAAGAAGGACATTTTCTTTATTATTTAAACCTTTCTTTTTAGTTCATTAAAGGCTATTAATTAGAATTTAACCCTCTAACGTTCACGACCGACCTACTAAATATTCAATTGCTAATATTGTAGTTGGTAAATGTCACGAGTCAC

Coding sequences of Glyma03g42310

Limit To All Plant Sequences

>Glyma03g42310.1   sequence type=CDS   gene model=Glyma03g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGCTTGTGCTTCCTCTGCAATTACAGCTGTTGCCATCTCTACGCCGAGTTCCGGGCAGAAGAATGGATCAGGAGGTTGTTTTCTTAGTGGAAGGAAATTGAGGGTGAAAAAGGAGAGAGCAGCAATTGGAGGACGATCGATGGGCACTACAGTGTGCGCAGTTGCTGAGCCTGACAGACCTCTATGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCACTCTACCTGGAGACTTCGGCTTTGACCCTCTTGGTCTTGGATCTGACCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACAAAGATTGGTGTCTTGAACACTCCTTCATGGTACTCAGCTGGAGAGCTGGAATACTTCACGGACACTACTACCCTCTTCATAGTTGAGCTCTTTTTCATTGGCTGGGCCGAGGGTAGAAGATGGGCTGACATAATCAAGCCAGGCTGTGTCAACACTGACCCCATCTTTCCCAACAACAAGCTCACCGGAACCGATGTGGGTTACCCTGGTGGCCTTTGGTTTGACCCCCTTGGTTGGGGAACCGGTTCTCCTCAGAAGATCAAGGACTTGAGAACTAAGGAGATCAAGAATGGCAGACTGGCCATGCTTGCTGTCATGGGTGCATGGTTCCAGCACATCTACACTGCCACCGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGTAAGTTTATTCATCACTACAACATCCTATACTAACCATTCTGCGTTTTTATTTTCTTACTCACTTTTTCTTTATTACAGGCTTTCACCCCTAAGTGAAAAGGCTAAGATCAACAATCAGATTACCAGCTGTTTGGGATGA

>Glyma03g42310.2   sequence type=CDS   gene model=Glyma03g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGCTTGTGCTTCCTCTGCAATTACAGCTGTTGCCATCTCTACGCCGAGTTCCGGGCAGAAGAATGGATCAGGAGGTTGTTTTCTTAGTGGAAGGAAATTGAGGGTGAAAAAGGAGAGAGCAGCAATTGGAGGACGATCGATGGGCACTACAGTGTGCGCAGTTGCTGAGCCTGACAGACCTCTATGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCACTCTACCTGGAGACTTCGGCTTTGACCCTCTTGGTCTTGGATCTGACCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACAAAGATTGGTGTCTTGAACACTCCTTCATGGTACTCAGCTGGAGAGCTGGAATACTTCACGGACACTACTACCCTCTTCATAGTTGAGCTCTTTTTCATTGGCTGGGCCGAGGGTAGAAGATGGGCTGACATAATCAAGCCAGGCTGTGTCAACACTGACCCCATCTTTCCCAACAACAAGCTCACCGGAACCGATGTGGGTTACCCTGGTGGCCTTTGGTTTGACCCCCTTGGTTGGGGAACCGGTTCTCCTCAGAAGATCAAGGACTTGAGAACTAAGGAGATCAAGAATGGCAGACTGGCCATGCTTGCTGTCATGGGTGCATGGTTCCAGCACATCTACACTGCCACCGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGA

Predicted protein sequences of Glyma03g42310

Limit To All Plant Sequences

>Glyma03g42310.1   sequence type=predicted peptide   gene model=Glyma03g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACASSAITAVAISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGGRSMGTTVCAVAEPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAVSLFITTTSYTNHSAFLFSYSLFLYYRLSPLSEKAKINNQITSCLG*

>Glyma03g42310.2   sequence type=predicted peptide   gene model=Glyma03g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACASSAITAVAISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGGRSMGTTVCAVAEPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAAFTPK*

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