Glyma03g42250 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g42250

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47496922
stop:	47499831
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10500	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr4:6491089-6492342 FORWARD LENGTH=349	SoyBase	E_val: 5.00E-163	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0019748	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_B9RMV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase, putative n=1 Tax=Ricinus communis RepID=B9RMV2_RICCO	SoyBase	E_val: 7.00E-180	ISS
UniRef100_UPI000189D2DE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D2DE related cluster n=1 Tax=unknown RepID=UPI000189D2DE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g42250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g261600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g42250

Limit To All Plant Sequences

>Glyma03g42250.2   sequence type=CDS   gene model=Glyma03g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAAAGTTAGTGCTGGTATCAGACATGGCTTCCACTATGAAGCAGGTTCCCTCTAATTTCATCAGGCCACTCGGTGACCGTCCAAATCTTCAAGGCGTCGTCCAATCCTCAGATGTTTGCATTCCTCTCATCGATCTCCAAGACCTTCATGGCCCCAATCGCTCCCACATCATCCAACAGATTGACCAAGCTTGCCAAAATTATGGATTTTTTCAGGTGACAAATCATGGAGTTCCAGAGGGTGTGATTGAAAAGATAATGAAGGTGACAAGGGAGTTTTTCGGTTTACCAGAGAGTGAGAAATTGAAGAGTTACTCCACTGATCCATTCAAGGCAAGCAGGCTGTCCACTAGTTTCAACGTGAATAGTGAGAAGGTTTCCAGCTGGAGGGACTTCTTGAGACTTCACTGTCACCCTATAGAGGATTACATAAAGGAATGGCCCTCCAACCCTCCATCTTTAAGAGAAGATGTTGCAGAATACTGCAGGAAGATGAGAGGAGTATCATTGAAATTGGTGGAGGCAATTTCTGAAAGCTTAGGTTTGGAGAGGGATTACATTAACAGGGTAGTTGGAGGGAAGAAGGGGCAGGAACAACAGCACTTGGCAATGAACTACTATCCAGCGTGTCCAGAGCCAGAGCTGACATATGGGTTGCCAGGGCATACTGATCCGACGGTGATAACCATACTCCTCCAAGATGAGGTACCGGGATTACAGGTTCTCAAAGATGGCAAGTGGGTGGCTGTGAATCCCATCCCCAACACCTTCGTAGTGAACGTGGGTGATCAAATTCAGGTGATAAGCAATGACAAGTATAAGAGTGTACTGCATCGAGCAGTGGTGAATTGCAACAAGGACAGGATTTCCATTCCAACATTCTATTTTCCCTCAAATGACGCAATCATAGGACCCGCTCCACAACTCATACATCATCATCACCATCCGCCTCAGTACAACAACTTTACGTACAATGAATACTACCAGAATTTTTGGAACAGGGGACTTTCCAAAGAAACTTGCCTCGATATCTTCAAGGCCTAA

Predicted protein sequences of Glyma03g42250

Limit To All Plant Sequences

>Glyma03g42250.2   sequence type=predicted peptide   gene model=Glyma03g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKLVLVSDMASTMKQVPSNFIRPLGDRPNLQGVVQSSDVCIPLIDLQDLHGPNRSHIIQQIDQACQNYGFFQVTNHGVPEGVIEKIMKVTREFFGLPESEKLKSYSTDPFKASRLSTSFNVNSEKVSSWRDFLRLHCHPIEDYIKEWPSNPPSLREDVAEYCRKMRGVSLKLVEAISESLGLERDYINRVVGGKKGQEQQHLAMNYYPACPEPELTYGLPGHTDPTVITILLQDEVPGLQVLKDGKWVAVNPIPNTFVVNVGDQIQVISNDKYKSVLHRAVVNCNKDRISIPTFYFPSNDAIIGPAPQLIHHHHHPPQYNNFTYNEYYQNFWNRGLSKETCLDIFKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain